Evidence map›Paper›PMID 40303690›Full record

ArticleTransboundary and emerging diseases2023

Isolation and Characterization of Porcine Sapelovirus from the PDCoV-Positive Sample and Its Molecular Epidemiology in Henan Province, China.

Yunfei Zhang, Qianqian Li, Lulu Si, Junlong Gao, Jin Yuan, Lu Xia, Hui Hu

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yunfei ZhangThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Qianqian LiThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Lulu SiThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Junlong GaoThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Jin YuanThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Lu XiaThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.ORCID https://orcid.org/0000-0002-5574-2074
Hui HuThe College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450002, China.ORCID https://orcid.org/0000-0003-4514-5409

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine sapelovirus (PSV) is an emerging swine enteric virus that can cause various disorders including acute diarrhea, respiratory distress, reproductive failure, and polioencephalomyelitis in pigs. In this study, we isolated a PSV strain HNHB-01 from a clinical porcine deltacoronavirus- (PDCoV-) positive intestinal content of a diarrheic piglet. PSV was first identified using the small RNA deep sequencing and assembly, and further identified by the electron microscopic observation and the immunofluorescence assay. Subsequently, this virus was serially passaged in swine testis (ST) cells, and the complete genomics of PSV HNHB-01 passage 5 (P5), P30, P60, and P100 were sequenced and analyzed. 9 nucleotide mutations and 7 amino acid changes occurred in the PSV HNHB-01 P100 strain when compared with the PSV HNHB-01 P5. Pathogenicity investigation showed that orally inoculation of PSV HNHB-01 P30 could cause obvious clinical symptoms and had broad tissue tropism in 5-day-old piglets. Epidemiological investigation revealed that PSV infections and the coinfections of diarrhea coronaviruses were highly prevalent in swine herds. The complete genomes of 8 representative PSV epidemic strains were sequenced and analyzed. Phylogenetic analysis revealed that the PSV epidemic strains were closely related to other PSV reference strains that located in the Chinese clade. Furthermore, recombination analysis revealed that the recombination events were occurred in downstream of the 2C region in our sequenced PSV HNNY-02/CHN/2018 strain. Our results provided theoretical basis for future research studies of the pathogenic mechanism, evolutionary characteristics, and the development of vaccines against PSV.

Indexed as

Coronavirus InfectionsDeltacoronavirusSwine DiseasesAnimalsChinaDiarrheaGenome, ViralMolecular EpidemiologyPhylogenySwine

Identifiers

PMID40303690
PMCPMC12017218

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.