Evidence map›Paper›PMID 40303193›Full record

ArticleTransboundary and emerging diseases2024

Continuous Introduction of H5 High Pathogenicity Avian Influenza Viruses in Hokkaido, Japan: Characterization of Viruses Isolated in Winter 2022-2023 and Early Winter 2023-2024.

Lim Yik Hew, Norikazu Isoda, Fumihito Takaya, Kohei Ogasawara, Daiki Kobayashi, Loc Tan Huynh, Tatsuru Morita, Rio Harada, Nikolay Gennadievich Zinyakov, Dmitriy Borisovich Andreychuk and 7 more

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  10. Detection and characterisation of high pathogenicity avian influenza virus (H5N1/H5N8) clade 2.3.4.4b, Hong Kong SAR, China, 2021 to 2024.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Lim Yik HewLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.ORCID https://orcid.org/0009-0004-2766-084X
Norikazu IsodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.ORCID https://orcid.org/0000-0003-3480-988X
Fumihito TakayaBotanic Garden, Field Science Center for Northern Biosphere (FSC), Hokkaido University, Sapporo 060-0003, Hokkaido, Japan.
Kohei OgasawaraInstitute for Raptor Biomedicine Japan Co., Ltd., Kushiro 084-0922, Hokkaido, Japan.
Daiki KobayashiLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.ORCID https://orcid.org/0009-0007-0072-1042
Loc Tan HuynhLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.ORCID https://orcid.org/0000-0001-9922-4802
Tatsuru MoritaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.
Rio HaradaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.
Nikolay Gennadievich ZinyakovFederal Center for Animal Health (FGBI ARRIAH), Vladimir 600901, Russia.ORCID https://orcid.org/0000-0002-3015-5594
Dmitriy Borisovich AndreychukFederal Center for Animal Health (FGBI ARRIAH), Vladimir 600901, Russia.ORCID https://orcid.org/0000-0002-1681-5795
Ilya Alexandrovich ChvalaFederal Center for Animal Health (FGBI ARRIAH), Vladimir 600901, Russia.ORCID https://orcid.org/0000-0002-1659-3256
Viktor Nikolaevich IrzaFederal Center for Animal Health (FGBI ARRIAH), Vladimir 600901, Russia.
Yukiko WatanabeInstitute for Raptor Biomedicine Japan Co., Ltd., Kushiro 084-0922, Hokkaido, Japan.ORCID https://orcid.org/0000-0002-8512-172X
Hiroko FujitaBotanic Garden, Field Science Center for Northern Biosphere (FSC), Hokkaido University, Sapporo 060-0003, Hokkaido, Japan.
Keisuke SaitoInstitute for Raptor Biomedicine Japan Co., Ltd., Kushiro 084-0922, Hokkaido, Japan.
Takahiro HionoLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.ORCID https://orcid.org/0000-0001-8897-3592
Yoshihiro SakodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-Ku, Sapporo 060-0818, Hokkaido, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High pathogenicity avian influenza (HPAI) has impacted poultry and wild birds globally. The number of H5 HPAI virus (HPAIV) infection cases in wild birds in Hokkaido (Northern Japan) was high in the last two seasons, contributing to virus spillover to resident birds and poultry. Therefore, H5 HPAIVs in birds and mammals in Hokkaido in winter 2022-2023 and 2023-2024 were monitored and viruses were phylogenetically, antigenically, and pathogenetically characterized. Thirty HPAIV isolates were subtyped and pathotyped by sequencing the hemagglutinin (HA) gene of viruses. Phylogenetic analysis of the HA gene revealed that all isolated HPAIVs were categorized into clade 2.3.4.4b and divided into three groups (G2b, G2c, and G2d). Most isolates belonging to subgroup G2d clustered with isolates in winter 2021-2022 in Hokkaido. The other isolates were categorized into two subgroups, G2b and G2c, mainly composed of isolates in Honshu Island in winter 2021-2022 and 2022-2023, respectively. Two H5 HPAIVs isolated in Eastern Russia in spring and autumn 2022 were genetically close to most Hokkaido isolates (G2d), and a virus isolated in Hokkaido in November 2023 was also grouped in subgroup G2d. Further analysis of all eight gene segments identified six types of gene constellations. Cross-hemagglutination inhibition test indicated that the antigenicity of H5 HPAIVs isolated in the last several seasons was similar within them but slightly different from that in the 2010s. Three chicken breeds were intranasally challenged with four representative isolates to assess their pathogenicity. All chickens except one broiler chicken were dead until 5-day postchallenge with different pathogenicity of these viruses. The pathogenicity of one HPAIV strain was significantly lower in broiler chickens than in layer chickens. The mixture of multiple characteristics of HPAIVs in Hokkaido was confirmed by bird migration routes. Thus, many HPAIVs can be brought and scattered anywhere on Earth.

Indexed as

Influenza A virusInfluenza in BirdsAnimalsBirdsJapanPhylogenySeasonsVirulence

Identifiers

PMID40303193
PMCPMC12016768

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.