Evidence map›Paper›PMID 40303172›Full record

ArticleTransboundary and emerging diseases2024

Major Shift of Influenza A Virus of Swine (IAV-S) by Human-to-Swine Spillover of the 2009 Pandemic Virus in Korea.

Seung-Chai Kim, Taek Geun Lee, Eun-Jee Na, Sung-Hyun Moon, Hwan-Ju Kim, Chang-Gi Jeong, Young Ki Choi, Yeonsu Oh, Chung-Young Lee, Jae-Ku Oem and 2 more

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Seung-Chai KimCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0002-1152-2248
Taek Geun LeeCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0003-2230-696X
Eun-Jee NaCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0003-1685-3721
Sung-Hyun MoonCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0003-3137-7532
Hwan-Ju KimCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0001-5524-4908
Chang-Gi JeongCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0002-0186-9248
Young Ki ChoiCollege of Medicine and Medical Research Institute Chungbuk National University, Cheongju 28644, Republic of Korea.ORCID https://orcid.org/0000-0002-0872-0147
Yeonsu OhCollege of Veterinary Medicine and Institute of Veterinary Science Kangwon National University, Chuncheon 24341, Republic of Korea.ORCID https://orcid.org/0000-0001-5743-5396
Chung-Young LeeDepartment of Microbiology School of Medicine Kyungpook National University, Daegu 41566, Republic of Korea.ORCID https://orcid.org/0000-0003-3037-7581
Jae-Ku OemCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0002-1598-4343
Won-Il KimCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0002-0465-0794
Ho-Seong ChoCollege of Veterinary Medicine Jeonbuk National University, Iksan 54596, Republic of Korea.ORCID https://orcid.org/0000-0001-7443-167X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 2009 influenza A H1N1 pandemic (pdm09) originated from the influenza A virus of swine (IAV-S) through multiple reassortment events with avian and human IAVs. The pdm09 reportedly reintroduced the virus to pigs, contributing to the evolution and diversity of IAV-S through frequent reassortment and drifts. Surveillance and whole-genome sequencing of IAV-S from conventional pig farms in Korea during 2021-2022 revealed that the genetic diversity of H1 and H3 IAV-S was continuously enriched after human-to-swine spillover of pdm09 viruses with long-term maintenance, persistence, and reassortment of virus lineages. Evidence of additional human-to-swine spillover of viruses that are different from the 2009 virus but close to that of the recent H1N1pdm09 human vaccine was identified in this study. The identification of swine-adapted pdm09 viruses, which have accumulated amino acid mutations with potentially altered antigenicity and a unique potential N-glycosylation site within the haemagglutinin (HA) gene, suggests the distinctive evolution of spillover pdm09 viruses in swine. The genetic constellation of the recently emerging Eurasian avian-like swine lineage and the preexisting classical swine lineage H1 viruses in Korea has been expanded through reassortment with cocirculating pdm09 viruses and/or H3N2 IAV-S harboring the pdm09 M gene (H3N2pM). Collectively, after the major shift of Korean IAV-S from the classical swine lineage to the pdm09 lineage in 2009, the frequent spillover of pdm09 viruses and the circulation of IAV-S harboring pdm09 gene segments led to the continuous diversification of IAV-S through antigenic drift and shift, raising concerns about the potential reintroduction of these viruses to humans.

Indexed as

Influenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza, HumanOrthomyxoviridae InfectionsSwine DiseasesAnimalsGenetic VariationHumansPandemicsPhylogenyRepublic of KoreaSwine

Identifiers

PMID40303172
PMCPMC12016703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.