Evidence map›Paper›PMID 40303057›Full record

ArticleTransboundary and emerging diseases2024

The Emergence of Novel Variants of the Porcine Epidemic Diarrhea Virus Spike Gene from 2011 to 2023.

Lin Zhang, Jian-Bo Liu, Hui-Zhen Liu, Yue-Xiao Lian, Yao-Wei Huang, Feng Cong

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lin ZhangCollege of Veterinary Medicine South China Agricultural University, Guangzhou 510642, China.ORCID https://orcid.org/0000-0002-6921-4950
Jian-Bo LiuState Key Laboratory of Respiratory Disease CAS Key Laboratory of Regenerative Biology Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine Guangdong Provincial Key Laboratory of Biocomputing Guangzhou Institutes of Biomedicine and Health Chinese Academy of Sciences, Guangzhou 510530, China.ORCID https://orcid.org/0009-0006-3910-5776
Hui-Zhen LiuGuangdong Laboratory Animals Monitoring Institute, Guangzhou 510663, China.ORCID https://orcid.org/0009-0006-2789-6195
Yue-Xiao LianGuangdong Laboratory Animals Monitoring Institute, Guangzhou 510663, China.ORCID https://orcid.org/0009-0001-9440-8650
Yao-Wei HuangCollege of Veterinary Medicine South China Agricultural University, Guangzhou 510642, China.ORCID https://orcid.org/0000-0001-9755-8411
Feng CongGuangdong Laboratory Animals Monitoring Institute, Guangzhou 510663, China.ORCID https://orcid.org/0000-0002-3813-0500

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The porcine epidemic diarrhea virus (PEDV) has caused severe economic losses in the pig industry. Since its discovery, the virus has spread in pig herds for more than 50 years. Many new features have been found in the PEDV spike genes. In this study, 123 representative S genes were used to analyze their characteristics across strains. Phylogenetic analysis revealed that PEDV can be divided into nine groups: G1a, G1b, G1c, G1d, G2a, G2b, G2c, G2d, and G3. In addition, 21 different lengths of the S gene were found. Analysis of the amino acid insertion and deletion sites revealed that most deletions and insertions occurred in the loops of the spike quaternary structure, primarily in the D0 and N-terminal domains (NTDs). According to the above results, PEDV has undergone considerable evolution, possibly under the immune pressure of vaccination. These results are highly important for understanding the current epidemic situation of PEDV.

Indexed as

Coronavirus InfectionsPorcine epidemic diarrhea virusSpike Glycoprotein, CoronavirusSwine DiseasesAnimalsGenetic VariationPhylogenySwineSpike Glycoprotein, Coronavirus

Identifiers

PMID40303057
PMCPMC12017180

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.