Evidence map›Paper›PMID 40303020›Full record

ArticleTransboundary and emerging diseases2024

Improved African Swine Fever Detection for Environmental Samples in the Presence of Organic Contaminants.

Taeyong Kwon, Jordan T Gebhardt, Eu Lim Lyoo, Natasha N Gaudreault, Jessie D Trujillo, Jason C Woodworth, Chad B Paulk, Cassandra K Jones, Juergen A Richt

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Taeyong KwonDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0009-0001-4120-1584
Jordan T GebhardtDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0002-6144-6714
Eu Lim LyooDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0003-2393-1417
Natasha N GaudreaultDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0002-7195-785X
Jessie D TrujilloDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.
Jason C WoodworthDepartment of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0001-7268-4278
Chad B PaulkDepartment of Grain Science and Industry, College of Agriculture, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0001-8844-6477
Cassandra K JonesDepartment of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, Kansas 66506, USA.
Juergen A RichtDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506, USA.ORCID https://orcid.org/0000-0001-7308-5672

Funding

Sex-specific effects of obestity on Influenza A virus infection and immunityP20GM130448 · NIGMS · KANSAS STATE UNIVERSITY · PI WAITHAKA MWANGI · 2020 to 2026
$15.8M
NIGMS NIH HHS P20 GM130448
6 · The paper itself

Abstract

Geographical expansion and trans-continental transmission of the African swine fever virus (ASFV) pose a significant risk to the global swine industry due to its high impact on swine health and agro-economy. Several different modes of ASFV transmission make it difficult to predict and prevent ASFV introduction to the free area and its spread in the affected area. Indirect transmission through contaminated surfaces could be one of the possible routes to introduce ASFV to the United States due to its high resistance on environmental surfaces and the frequency of international movements. However, there is limited knowledge about environmental samples for ASFV surveillance, when compared to clinical samples from infected pigs. Therefore, the aim of this study was to develop methods for better detection of ASFV DNA in the presence of four different types of organic contaminants: soil, swine feces, feed dust, and their mixture. The presence of organic contaminants negatively affected the sensitivity of ASFV DNA detection. Centrifugation and filtration were crucial for ASFV detection in environmental samples with soil and mixture, whereas filtration reduced the sensitivity of ASFV DNA detection in samples from clean surfaces and swine feces- and feed dust-contaminated surfaces. Detection of ASFV was significantly improved when sampled by the sponge stick with DNA/RNA shield when compared to the cost-effective sampling strategy, the cotton gauze with phosphate-buffered saline. These findings highlight the effect of organic contaminants and the use of the nucleic acid stabilization buffer on ASFV diagnostic performance and provide important background for ASFV preparedness.

Indexed as

African Swine FeverAfrican Swine Fever VirusEnvironmental MonitoringAnimal FeedAnimalsDNA, ViralDustFecesSwineDNA, ViralDustAfrican swine feverASFVenvironmental samplefomiteorganic contaminantssurface

Identifiers

PMID40303020
PMCPMC12016804

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.