Evidence map›Paper›PMID 40302032›Full record

ArticleThe ISME journal2025

Bifidobacterium breve synergizes with Akkermansia muciniphila and Bacteroides ovatus to antagonize Clostridioides difficile.

Yanan Li, Wen Rui, Xiaoya Sheng, Xilong Deng, Xiaoqian Li, Lingtong Meng, He Huang, Jingpeng Yang

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. Review
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  9. Article
  10. Mechanisms ofFrontiers in cellular and infection microbiology · 2025
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yanan LiState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Wen RuiState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Xiaoya ShengState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Xilong DengState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Xiaoqian LiState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Lingtong MengState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
He HuangState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.
Jingpeng YangState Key Laboratory of Microbial Technology, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, Jiangsu 210033, China.ORCID 0000-0002-0802-2891

Funding

National Natural Science Foundation of China 32200154
6 · The paper itself

Abstract

The development of ecologically based in vivo microecological formulations for treating Clostridioides difficile infection (CDI) is a current research focus. Here, we selected three microorganisms-Akkermansia muciniphila (AM), Bacteroides ovatus (BO), and Bifidobacterium breve (BB)-to formulate a mixed bacterial formulation (ABB). Subsequently, we evaluated the ecological interactions among these three microorganisms and investigated their therapeutic efficacy in a CDI murine model. Our investigation revealed the presence of a commensalism relationship among AM, BO, and BB. These microorganisms collectively formed a robust and densely packed symbiotic biofilm, with BB being the predominant member in terms of numerical abundance. This phenomenon was concomitant with a marked elevation in the levels of AI-2 and c-di-GMP. ABB exhibits the capability to inhibit crucial biological indicators of C. difficile (CD), such as toxin production, through the secretion of substantial quantities of lactic acid. Additionally, ABB indirectly suppresses CD by activating the NF-κB signaling pathway in Raw 264.7 cells, which stimulates the secretion of significant quantities of IL-6, IL-8, TNF-α, and IL-1β. ABB demonstrated exceptional efficacy in a CDI murine model, as evidenced by a substantial enhancement in survival rates and intestinal short-chain fatty acid level, the down-regulation of inflammation-associated cytokine secretion, a notable reduction in fecal CD toxin levels, and CD viable bacterial counts. Concurrently, there was an augmentation in the level of gut microbial diversity, accompanied by a rapid reduction in Enterococcus abundance. This ABB formulation holds promise for further development into a novel microecological formulation for the treatment of CDI.

Indexed as

AntibiosisBacteroidesBifidobacterium breveClostridioides difficileClostridium InfectionsMicrobial InteractionsProbioticsAkkermansiaAnimalsBiofilmsCytokinesDisease Models, AnimalGastrointestinal MicrobiomeMiceNF-kappa BRAW 264.7 CellsCytokinesNF-kappa BAkkermansia muciniphilaBacteroides ovatusBifidobacterium brevecommensalismClostridioides difficileNF-κB signaling pathway

Identifiers

PMID40302032
PMCPMC12089032

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.