Evidence map›Paper›PMID 40302006›Full record

ArticleBiology direct2025

Identification of M2 macrophage-related genes associated with diffuse large B-cell lymphoma via bioinformatics and machine learning approaches.

Jiayi Zhang, Zhixiang Jia, Jiahui Zhang, Xiaohui Mu, Limei Ai

Abstract read
In one paragraph

Article in Biology direct, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Integrative Multiomics and Single-Cell Profiling Identify TNFRSF1AComputational and structural biotechnology journal · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jiayi ZhangDepartment of Hematology, The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, China.
Zhixiang JiaDepartment of Hematology, The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, China.
Jiahui ZhangMedical College, Sanmenxia Vocational and Technical College, Sanmenxia, China.
Xiaohui MuDepartment of Hematology, The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, China.
Limei AiDepartment of Hematology, The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, China. alm121001@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

M2 macrophages play a crucial role in the initiation and progression of various tumors, including diffuse large B-cell lymphoma (DLBCL). However, the characterization of M2 macrophage-related genes in DLBCL remains incomplete. In this study, we downloaded DLBCL-related datasets from the Gene Expression Omnibus (GEO) database and identified 77 differentially expressed genes (DEGs) between the control group and the treat group. We assessed the immune cell infiltration using CIBERSORT analysis and identified modules associated with M2 macrophages through weighted gene co-expression network analysis (WGCNA). Using the Least Absolute Shrinkage and Selection Operator (LASSO), Support Vector Machine Recursive Feature Elimination (SVM-RFE), and Random Forest (RF) algorithms, we screened for seven potential diagnostic biomarkers with strong diagnostic capabilities: SMAD3, IL7R, IL18, FAS, CD5, CCR7, and CSF1R. Subsequently, the constructed logistic regression model and nomogram demonstrated robust predictive performance. We further investigated the expression levels, prognostic values, and biological functions of these biomarkers. The results showed that SMAD3, IL7R, IL18, FAS and CD5 were associated with the survival of DLBCL patients and could be used as markers to predict the prognosis of DLBCL. Our study introduces a novel diagnostic strategy and provides new insights into the potential mechanisms underlying DLBCL. However, further validation of the practical value of these genes in DLBCL diagnosis is warranted before clinical application.

Indexed as

Lymphoma, Large B-Cell, DiffuseMachine LearningMacrophagesBiomarkers, TumorComputational BiologyGene Expression Regulation, NeoplasticHumansPrognosisBiomarkers, TumorBioinformaticsDiffuse large B-cell lymphomaImmune infiltrationM2 macrophages

Identifiers

PMID40302006
PMCPMC12039291

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.