Evidence map›Paper›PMID 40301624›Full record

ArticleNature methods2025

BiaPy: accessible deep learning on bioimages.

Daniel Franco-Barranco, Jesús A Andrés-San Román, Ivan Hidalgo-Cenalmor, Lenka Backová, Aitor González-Marfil, Clément Caporal, Anatole Chessel, Pedro Gómez-Gálvez, Luis M Escudero, Donglai Wei and 2 more

Abstract readLetter
PubMed Publisher
In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Daniel Franco-BarrancoMRC Laboratory of Molecular Biology, University of Cambridge, Cambridge, UK.
Jesús A Andrés-San RománInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla, Seville, Spain.ORCID http://orcid.org/0000-0003-3197-5014
Ivan Hidalgo-CenalmorDepartment of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), San Sebastian, Spain.ORCID http://orcid.org/0009-0000-8923-568X
Lenka BackováDepartment of Computer Science and Artificial Intelligence, University of the Basque Country (UPV/EHU), San Sebastian, Spain.
Aitor González-MarfilDonostia International Physics Center (DIPC), San Sebastian, Spain.ORCID http://orcid.org/0000-0003-1367-4154
Clément CaporalLaboratoire d'Optique et Biosciences, CNRS, Inserm, Ecole Polytechnique, Institut Polytechnique de Paris, Palaiseau, France.ORCID http://orcid.org/0000-0002-9441-9173
Anatole ChesselLaboratoire d'Optique et Biosciences, CNRS, Inserm, Ecole Polytechnique, Institut Polytechnique de Paris, Palaiseau, France.ORCID http://orcid.org/0000-0002-1326-6305
Pedro Gómez-GálvezMRC Laboratory of Molecular Biology, University of Cambridge, Cambridge, UK.
Luis M EscuderoInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla, Seville, Spain.ORCID http://orcid.org/0000-0001-8030-1820
Donglai WeiDepartment of Computer Science, Boston College, Boston, MA, USA.
Arrate Muñoz-BarrutiaDepartamento de Bioingenieria, Universidad Carlos III de Madrid, Madrid, Spain. mamunozb@ing.uc3m.es.ORCID http://orcid.org/0000-0002-1573-1661
Ignacio Arganda-CarrerasDonostia International Physics Center (DIPC), San Sebastian, Spain. iargandacarreras@gmail.com.ORCID http://orcid.org/0000-0003-0229-5722

Funding

Euskal Herriko Unibertsitatea (University of the Basque Country) GIU23/022
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.