Evidence map›Paper›PMID 40301379›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the sap beetle Glischrochilus (Librodor) japonius (Coleoptera: Nitidulidae).

Panpan Li, Xinyuan Fan, Sheng Li, Yijie Tong, Zhehao Tian, Yingming Zhang, Shaolong Wu, Can Wang, Yansong Xiao, Guoquan Wang and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Panpan Li *Guangxi Key Laboratory of Agro-environment and Agric-products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, Guangxi, 530004, China.ORCID http://orcid.org/0000-0002-4292-6624
Xinyuan Fan *Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management (Chinese Academy of Sciences), Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Sheng LiKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management (Chinese Academy of Sciences), Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Yijie TongKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management (Chinese Academy of Sciences), Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.ORCID http://orcid.org/0000-0002-6938-9865
Zhehao TianKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management (Chinese Academy of Sciences), Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Yingming ZhangGuangdong Chebaling National Nature Reserve, Shaoguan, Guangdong, 512500, China.
Shaolong WuTobacco Company of Hunan Province, Changsha, Hunan, China. slwuhnyc@126.com.
Can WangTobacco Company of Hunan Province, Changsha, Hunan, China.
Yansong XiaoChenzhou Tobacco Company of Hunan Province, Changsha, Hunan, China.
Guoquan WangGuangxi Key Laboratory of Agro-environment and Agric-products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, Guangxi, 530004, China. wangguoquan0@163.com.
Ming BaiKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management (Chinese Academy of Sciences), Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China. baim@ioz.ac.cn.ORCID http://orcid.org/0000-0001-9197-5900

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sap beetles are widely distributed in the Holarctic and tropical regions, with diverse feeding habits and strong adaptability. They play important roles in the decay of plants, the spread of fungi and bacteria, and the carbon and nitrogen cycles in agricultural ecosystems. Here, we provide an annotated, chromosome level reference genome assembly for a sap beetle Glischrochilus (Librodor) japonius (Motschulsky, 1857), a member of the family Nitidulidae, assembled using PacBio HiFi and Hi-C data from female specimens. The final assembly has a total size of 789.06 Mb, with 94.91% of the sequence successfully anchored to 10 chromosomes. The scaffold N50 is 77.84 Mb, and BUSCO (endopterygota_odb10 database) completeness is 97.20%. Repetitive elements comprise 54.67% of the genome (431.38 Mb). We identified 1,673 noncoding RNAs and predicted 22,526 protein-coding genes in the genome. This genome will serve as a valuable resource for advancing our understanding of the evolution and ecology of sap beetles, and will facilitate comparative studies of genome structure within the Nitidulidae family.

Indexed as

Chromosomes, InsectColeopteraGenome, InsectAnimalsFemaleRepetitive Sequences, Nucleic Acid

Identifiers

PMID40301379
PMCPMC12041576

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.