Evidence map›Paper›PMID 40301320›Full record

ArticleNature communications2025

Structural insights into terminal arabinosylation of mycobacterial cell wall arabinan.

Yaqi Liu, Chelsea M Brown, Satchal Erramilli, Yi-Chia Su, Shih-Yun Guu, Po-Sen Tseng, Yu-Jen Wang, Nam Ha Duong, Piotr Tokarz, Brian Kloss and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Yaqi LiuDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY, USA.ORCID http://orcid.org/0009-0007-2281-8160
Chelsea M BrownSchool of Life Sciences & Department of Chemistry, University of Warwick, Coventry, UK.ORCID http://orcid.org/0000-0003-2006-5015
Satchal ErramilliDepartment of Biochemistry and Molecular Biophysics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-8694-7681
Yi-Chia SuInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Shih-Yun GuuInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Po-Sen TsengDepartment of Chemistry, University of Alberta, Edmonton, AB, Canada.ORCID http://orcid.org/0000-0003-2860-5725
Yu-Jen WangInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Nam Ha DuongInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.ORCID http://orcid.org/0009-0000-3626-6271
Piotr TokarzDepartment of Biochemistry and Molecular Biophysics, University of Chicago, Chicago, IL, USA.
Brian KlossDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-0130-8739
Cheng-Ruei HanInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Hung-Yu ChenInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
José RodriguesInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-UNL), Oeiras, Portugal.ORCID http://orcid.org/0000-0003-0829-9054
Kay-Hooi KhooInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Margarida ArcherInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-UNL), Oeiras, Portugal.ORCID http://orcid.org/0000-0001-8419-5420
Anthony A KossiakoffDepartment of Biochemistry and Molecular Biophysics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-3174-9359
Todd L LowaryInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC. tlowary@as.edu.tw.ORCID http://orcid.org/0000-0002-8331-8211
Phillip J StansfeldSchool of Life Sciences & Department of Chemistry, University of Warwick, Coventry, UK. Phillip.Stansfeld@warwick.ac.uk.ORCID http://orcid.org/0000-0001-8800-7669
Rie NygaardDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY, USA. rin7007@med.cornell.edu.ORCID http://orcid.org/0000-0002-0425-234X
Filippo ManciaDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY, USA. fm123@cumc.columbia.edu.ORCID http://orcid.org/0000-0003-3293-2200

Funding

Chaperone-Assisted Structure Determination of Membrane ProteinsR01GM117372 · NIGMS · UNIVERSITY OF CHICAGO · PI ANTHONY A KOSSIAKOFF · 2016 to 2026
$4.0M
Structural basis of integral membrane enzyme functionR35GM132120 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Filippo Mancia · 2019 to 2026
$3.7M
The role of cardiolipin in the biogenesis of the Gram-negative bacterial cell envelopeR01AI174416 · NIAID · UNIVERSITY OF GEORGIA · PI Michael Stephen Trent · 2023 to 2026
$2.4M
NIAID NIH HHS R01 AI174416NIGMS NIH HHS R01 GM117372NIGMS NIH HHS R35 GM132120U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM132120Wellcome Trust
6 · The paper itself

Abstract

The global challenge of tuberculosis, caused by Mycobacterium tuberculosis (Mtb), is compounded by the emergence of drug-resistant strains. A critical factor in Mtb's pathogenicity is its intricate cell envelope, which acts as a formidable barrier against immune defences and pharmacological interventions. Central to this envelope are arabinogalactan (AG) and lipoarabinomannan (LAM), two complex polysaccharides containing arabinan domains essential for maintaining cell wall structure and function. The arabinofuranosyltransferase AftB plays a pivotal role in the biosynthesis of these arabinan domains by catalyzing the addition of β-(1 → 2)-linked terminal arabinofuranose residues. Here, we present the cryo-EM structures of Mycobacterium chubuense AftB in both its apo form and bound to a donor substrate analog, resolved at 2.9 Å and 3.4 Å resolution, respectively. These structures reveal that AftB has a GT-C fold, with a transmembrane (TM) domain comprised of eleven TM helices and a periplasmic cap domain. AftB has a distinctive irregular, tube-shaped cavity that connects two proposed substrate binding sites. Through an integrated approach combining structural analysis, biochemical assays, and molecular dynamics simulations, we delineate the molecular basis of AftB's reaction mechanism and propose a model for its catalytic function.

Indexed as

Cell WallMycobacteriumPentosyltransferasesPolysaccharidesArabinoseBacterial ProteinsCryoelectron MicroscopyGalactansLipopolysaccharidesModels, MolecularMycobacterium tuberculosisarabanarabinogalactanArabinosearabinosyltransferaseBacterial ProteinsGalactanslipoarabinomannanLipopolysaccharidesPentosyltransferasesPolysaccharides

Identifiers

PMID40301320
PMCPMC12041299

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.