Evidence map›Paper›PMID 40299701›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

A complete and dynamic tree of birds.

Emily Jane McTavish, Jeff A Gerbracht, Mark T Holder, Marshall J Iliff, Denis Lepage, Pamela C Rasmussen, Benjamin D Redelings, Luna L Sánchez Reyes, Eliot T Miller

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  7. Codon usage bias and molecular evolution ofFrontiers in genetics · 2026
    Article
  8. Article
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  12. Parental investment and body temperature explain encephalization in vertebrates.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
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  15. Article
  16. Synthesizing decades of research into one tree for birds.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Emily Jane McTavishDepartment of Life and Environmental Sciences, School of Natural Sciences, Merced, CA 95343.ORCID 0000-0001-9766-5727
Jeff A GerbrachtCornell Lab of Ornithology, Cornell University, Ithaca, NY 14850.ORCID 0000-0003-0551-5989
Mark T HolderDepartment of Ecology and Evolutionary Biology, and the Biodiversity Institute, University of Kansas, Lawrence, KS 66045.
Marshall J IliffCornell Lab of Ornithology, Cornell University, Ithaca, NY 14850.
Denis LepageBirds Canada, Port Rowan N0E 1M0, ON, Canada.
Pamela C RasmussenCornell Lab of Ornithology, Cornell University, Ithaca, NY 14850.
Benjamin D RedelingsDepartment of Ecology and Evolutionary Biology, and the Biodiversity Institute, University of Kansas, Lawrence, KS 66045.ORCID 0000-0002-3278-4343
Luna L Sánchez ReyesDepartment of Life and Environmental Sciences, School of Natural Sciences, Merced, CA 95343.
Eliot T MillerCornell Lab of Ornithology, Cornell University, Ithaca, NY 14850.ORCID 0000-0001-7565-6336

Funding

Statistical Innovation to Integrate Sequences and Phenotypes for Scalable Phylodynamic InferenceR01AI153044 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Marc A. Suchard · 2021 to 2026
$2.4M
NIAID NIH HHS R01 AI153044NSF 1759838NSF 1759846
6 · The paper itself

Abstract

We present a complete, time-scaled, evolutionary tree of the world's bird species. This tree unites phylogenetic estimates for 9,239 species from 262 studies published between 1990 and 2024, using the Open Tree synthesis algorithm. The remaining species are placed in the tree based on curated taxonomic information. The tips of this complete tree are aligned to the species in the Clements Taxonomy used by eBird and other resources, and cross-mapped to other taxonomic systems including the Open Tree of Life (Open Tree), National Center for Biotechnology Information, and Global Biodiversity Information Facility. The total number of named bird species varies between 10,824 and 11,017 across the taxonomy versions we applied (v2021, v2022, and v2023). We share complete trees for each taxonomy version. The procedure, software, and data stores we used to generate this tree are public and reproducible. The tree presented here is Aves 1.3 and can be easily updated with new phylogenetic information as new estimates are published. We demonstrate the types of large-scale analyses this data resource enables by linking geographic data with the phylogeny to calculate the regional phylogenetic diversity of birds across the world. We will release updated versions of the phylogenetic synthesis and taxonomic translation tables annually. The procedure we describe here can be applied to developing complete phylogenetic estimates for any taxonomic group of interest.

Indexed as

BirdsPhylogenyAlgorithmsAnimalsBiodiversityevolutionopen dataphylogenytaxonomy

Identifiers

PMID40299701
PMCPMC12067227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.