Evidence map›Paper›PMID 40299107›Full record

ArticleArchives of virology2025

HPV genotypes in Africa: comprehensive analysis of genetic diversity and evolutionary dynamics.

Malika Allali, Rachid El Fermi, Khaoula Errafii, Wajih Abdelaziz, Najib Al Idrissi, Karima Fichtali, Hicham El Fazazi, Adil El Ghanmi, Bouchra Ghazi, Sanaa El Majjaoui and 6 more

Abstract read
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In one paragraph

Article in Archives of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Malika AllaliVirology and Public Health Laboratory, Centre de Serums et Vaccins (Institut Pasteur du Maroc), Casablanca, Morocco.
Rachid El Fermi *African Genome Center, Mohamed IV Polytechnic University, Benguerir, 43151, Morocco.
Khaoula Errafii *African Genome Center, Mohamed IV Polytechnic University, Benguerir, 43151, Morocco.
Wajih AbdelazizResearch Team E2SN, ENSAM, Mohammed V University in Rabat, Rabat, Morocco.
Najib Al IdrissiLaboratory of Genomics, Genetics, Epigenetics, Precision and Predictive Medicines (PerMed), Faculty of Medicine, Mohammed VI University of Sciences and Health, Casablanca, Morocco.
Karima FichtaliHôpital Cheikh Khalifa ibn Zaid, Casablanca, Morocco.
Hicham El FazaziFertility Center Cheikh Zaid International University Hospital, Abulcasis International University of Health Sciences, Rabat, Morocco.
Adil El GhanmiHôpital Cheikh Khalifa ibn Zaid, Casablanca, Morocco.
Bouchra GhaziLaboratory of Genomics, Genetics, Epigenetics, Precision and Predictive Medicines (PerMed), Faculty of Medicine, Mohammed VI University of Sciences and Health, Casablanca, Morocco.
Sanaa El MajjaouiHôpital Cheikh Khalifa ibn Zaid, Casablanca, Morocco.
Nabil IsmailiHôpital Cheikh Khalifa ibn Zaid, Casablanca, Morocco.
Nouha MessaoudiVirology and Public Health Laboratory, Centre de Serums et Vaccins (Institut Pasteur du Maroc), Casablanca, Morocco.
Lahcen WakrimVirology and Public Health Laboratory, Centre de Serums et Vaccins (Institut Pasteur du Maroc), Casablanca, Morocco.
Youssef BakriLaboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, Genomic Center of Human Pathologies, Faculty of Medicine and Pharmacy, University Mohammed V, Rabat, Morocco.
Hassan GhazalScientific Department, National Center for Scientific and Technical Research (CNRST), Rabat, Morocco.
Salsabil Hamdi *Virology and Public Health Laboratory, Centre de Serums et Vaccins (Institut Pasteur du Maroc), Casablanca, Morocco. salsabil.hamdi@pasteur.ma.ORCID http://orcid.org/0000-0001-6575-0097

Funding

institut de rechreche cancer (IRC) institut de rechreche cancer (IRC)
6 · The paper itself

Abstract

Human papillomavirus (HPV) is a widespread and diverse group of viruses that are responsible for various clinical conditions, including cervical cancer, one of the most common cancers among women worldwide. In Africa, the prevalence and distribution of HPV genotypes vary significantly across different regions. In this study, we analyzed the genetic diversity, geographical distribution, and evolutionary dynamics of HPV genotypes across various African countries to provide insights into the prevalence and transmission patterns of HPV. A total of 9203 genome sequences of HPV isolates from cervical samples from 21 African countries were obtained from the GenBank database. Of these, 184 were identified as unique sequences and were used for further analysis. Phylogenetic analysis demonstrated that the African HPV sequences share genetic ancestry with European sequences, whereas American isolates are less closely related. Migration analysis revealed a significant asymmetry in HPV flow, with migration rates from Africa to Europe consistently exceeding those in the opposite direction, suggesting that Africa is a major source of HPV genetic variants entering Europe. This interconnectedness underscores the intricate interplay of historical, regional, and cultural determinants that have collectively contributed to shaping the genomic landscape of African strains. The geographically variable HPV genotypes 35, 31, 16, 18, 58, 45, 7, and 66 are the most common in Africa. Algeria, Morocco, Rwanda, and Guinea have diverse genotypes, and the rates of infection are highest in the Republic of Congo and Chad.

Indexed as

Evolution, MolecularGenetic VariationGenotypePapillomaviridaePapillomavirus InfectionsAfricaFemaleGenome, ViralHumansPhylogenyPhylogeographyPrevalenceUterine Cervical NeoplasmsAfricaCervical cancer (CC)Genotype variationGeographic distributionHuman papillomavirus (HPV)Phylogeny

Identifiers

PMID40299107

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.