Evidence map›Paper›PMID 40298943›Full record

ArticleJournal of chemical information and modeling2025

Including Physics-Informed Atomization Constraints in Neural Networks for Reactive Chemistry.

Shuhao Zhang, Michael Chigaev, Olexandr Isayev, Richard A Messerly, Nicholas Lubbers

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In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. ANI-1xBB: An ANI-Based Reactive Potential for Small Organic Molecules.Journal of chemical theory and computation · 2025
    Article
4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Shuhao ZhangDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States.ORCID 0000-0002-5174-1875
Michael ChigaevTheoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.
Olexandr IsayevDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States.ORCID 0000-0001-7581-8497
Richard A MesserlyTheoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.ORCID 0000-0003-1321-4246
Nicholas LubbersComputer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.ORCID 0000-0002-9001-9973

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Machine learning interatomic potentials (MLIPs) have emerged as powerful tools for investigating atomistic systems with high accuracy and a relatively low computational cost. However, a common and unaddressed challenge with many current neural network (NN) MLIP models is their limited ability to accurately predict the relative energies of systems containing isolated or nearly isolated atoms, which appear in various reactive processes. To address this limitation, we present a mathematical technique for modifying any existing atom-centered NN architecture to account for the energies of isolated atoms. The result produces a consistent prediction of the atomization energy (AE) of a system using minimal constraints on the model. Using this technique, we build a model architecture that we call hierarchically interacting particle neural network (HIP-NN)-AE, an AE-constrained version of the HIP-NN, as well as ANI-AE, the AE-constrained version of the accurate NN engine for molecular energies (ANI). Our results demonstrate AE consistency of AE-constrained models, which drastically improves the AE predictions for the models. We compare the AE-constrained approach to unconstrained models as well as models from the literature in other scenarios, such as bond dissociation energies, bond dissociation pathways, and extensibility tests. These results show that the constraints improve the model performance in some of these tasks and do not negatively affect the performance on any tasks. The AE constraint approach thus offers a robust solution to the challenges posed by isolated atoms in energy prediction tasks.

Indexed as

Neural Networks, ComputerMachine LearningThermodynamics

Identifiers

PMID40298943
PMCPMC12076496

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.