Evidence map›Paper›PMID 40298378›Full record

ArticlemBio2025

Targeting CTP synthetase 1 to restore interferon induction and impede nucleotide synthesis in SARS-CoV-2 infection.

Youliang Rao, Chao Qin, Bianca Espinosa, Ting-Yu Wang, Shu Feng, Ali Can Savas, Jill Henley, Lucio Comai, Chao Zhang, Pinghui Feng

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. CTP synthase: the hissing of the cellular serpent.Histochemistry and cell biology · 2022
    Review
  12. SARS-CoV-2 couples evasion of inflammatory response to activated nucleotide synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Structural basis for isoform-specific inhibition of human CTPS1.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Youliang Rao *Section of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Chao Qin *Section of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.ORCID 0000-0003-0393-1751
Bianca EspinosaDepartment of Chemistry, Dornsife College of Arts, Letters and Sciences, University of Southern California, Los Angeles, California, USA.
Ting-Yu WangSection of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Shu FengSection of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Ali Can SavasSection of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Jill HenleyDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Lucio ComaiDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Chao ZhangDepartment of Chemistry, Dornsife College of Arts, Letters and Sciences, University of Southern California, Los Angeles, California, USA.
Pinghui FengSection of Infection and Immunity, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.ORCID 0000-0002-8494-0205

Funding

Explore roles of HSV-1 in Alzheimer's disease using mouse modelsR01AG070904 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, CASEY, FENG, PINGHUI · 2021 to 2025
$3.9M
Regulated cGAS activation in HSV-1-associated neuropathogenesis.RF1AG088625 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FENG, PINGHUI · 2025 to 2025
$3.4M
Explore a key nucleotide synthesis enzyme to develop a broad-spectrum antiviral therapy.R01AI184716 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Pinghui Feng, Chao Zhang · 2025 to 2026
$1.6M
Targeting IKKepsilon-mediated nucleotide synthesis in KSHV-associated lymphomaR01CA285192 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Pinghui Feng · 2023 to 2026
$1.5M
Targeting the UL37 deamidase to impede HSV-1 infection.R21AI180537 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FENG, PINGHUI · 2024 to 2025
$450k
National Institute of Allergy and Infectious Diseases AI180537NCI NIH HHS CA285192NCI NIH HHS R01 CA285192NIAID NIH HHS R01 AI184716NIAID NIH HHS R21 AI180537NIA NIH HHS AG070904NIA NIH HHS R01 AG070904NIA NIH HHS RF1 AG088625
6 · The paper itself

Abstract

Despite the global impact caused by the most recent SARS-CoV-2 pandemic, our knowledge of the molecular underpinnings of its highly infectious nature remains incomplete. We report here that SARS-CoV-2 exploits cellular CTP synthetase 1 (CTPS1) to promote CTP synthesis and suppress interferon (IFN) induction. In addition to catalyzing CTP synthesis, CTPS1 also deamidates interferon regulatory factor 3 (IRF3) to dampen interferon induction. Screening a SARS-CoV-2 expression library, we identified several viral proteins that interact with CTPS1. Functional analyses demonstrate that ORF8 and Nsp8 activate CTPS1 to deamidate IRF3 and negate IFN induction, whereas ORF7b and ORF8 activate CTPS1 to promote CTP synthesis. These results highlight CTPS1 as a signaling node that integrates cellular metabolism and innate immune response. Indeed, small-molecule inhibitors of CTPS1 deplete CTP and boost IFN induction in SARS-CoV-2-infected cells, thus effectively impeding SARS-CoV-2 replication and pathogenesis in mouse models. Our work uncovers an intricate mechanism by which a viral pathogen couples immune evasion to metabolic activation to fuel viral replication. Inhibition of the cellular CTPS1 offers an attractive means to develop antiviral therapy against highly mutagenic viruses.IMPORTANCEOur understanding of the underpinnings of highly infectious SARS-CoV-2 is rudimentary at best. We report here that SARS-CoV-2 activates CTPS1 to promote CTP synthesis and suppress IFN induction, thus coupling immune evasion to activated nucleotide synthesis. Inhibition of the key metabolic enzyme not only depletes the nucleotide pool but also boosts host antiviral defense, thereby impeding SARS-CoV-2 replication. Targeting cellular enzymes presents a strategy to counter the rapidly evolving SARS-CoV-2 variants.

Indexed as

Carbon-Nitrogen LigasesCOVID-19InterferonsNucleotidesSARS-CoV-2AnimalsAntiviral AgentsCOVID-19 Drug TreatmentCytidine TriphosphateHEK293 CellsHumansImmunity, InnateInterferon Regulatory Factor-3MiceVero CellsViral ProteinsAntiviral AgentsCarbon-Nitrogen LigasesCTP synthetaseCytidine TriphosphateInterferon Regulatory Factor-3InterferonsIRF3 protein, humanNucleotidesViral Proteinsantiviral pharmacologyCTPS1interferonpyrimidine metabolismSARS-CoV-2

Identifiers

PMID40298378
PMCPMC12153265

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.