Evidence map›Paper›PMID 40296816›Full record

ArticleInternational health2025

Comparison of antimicrobial resistance genes on the ocular surface of patients with corneal infections in California and Malawi.

Gerami D Seitzman, Khumbo Kalua, Esther S Misanjo, Cindi Chen, Kevin Ouimette, Lina Zhong, YuHeng Liu, Danny Yu, Thomas Abraham, Nathaniel Wu and 4 more

Abstract readComparative Study
In one paragraph

Article in International health, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Gerami D SeitzmanFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.ORCID 0000-0003-1791-5509
Khumbo KaluaDepartment of Ophthalmology, Kamuzu College of Health Sciences, Blantyre, Malawi.
Esther S MisanjoDepartment of Ophthalmology, Kamuzu College of Health Sciences, Blantyre, Malawi.
Cindi ChenFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Kevin OuimetteFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Lina ZhongFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
YuHeng LiuFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Danny YuFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Thomas AbrahamFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Nathaniel WuFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Daisy YanFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Thomas M LietmanFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Armin HinterwirthFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.
Thuy DoanFrancis I. Proctor Foundation, University of California, San Francisco, CA 94158, USA.ORCID 0000-0003-2733-8370

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ULLIAN, ERIK M · 1985 to 2024
$16.8M
UCSF-Proctor Clinician Vision Scholars K12 ProgramK12EY031372 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THOMAS M LIETMAN, Yvonne Ou · 2020 to 2026
$3.9M
Vision Bioinformatics and ComputationP30EY037668 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Erik M Ullian · 2025 to 2026
$2.0M
Improving Corneal Ulcer Outcomes with Unbiased Pathogen and Antimicrobial Resistance DetectionR01EY032861 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DOAN, THUY A · 2022 to 2025
$1.6M
NEI NIH HHS EY002162NEI NIH HHS K12 EY031372NEI NIH HHS P30 EY002162NEI NIH HHS P30 EY037668NEI NIH HHS R01 EY032861NIH HHS K12EY031372NIH HHS R01EY032861
6 · The paper itself

Abstract

backgroundAntimicrobial resistance (AMR) determinants on the ocular surface may contribute to poor treatment responses.

methodsAn exploratory comparative analysis of ocular surface AMR determinants, as determined by RNA-sequencing (RNA-seq), on patients presenting with corneal infections at the Proctor Medical Clinic at the University of California San Francisco in San Francisco, CA, USA, and the Queen Elizabeth Central Hospital at the Department of Ophthalmology of Kamuzu College of Health Sciences in Blantyre, Malawi, was conducted. All patients underwent swabbing of three sites on the ocular surface: cornea, ipsilateral conjunctiva, and contralateral conjunctiva.

resultsMutations conferring macrolide resistance were present on the ocular surface in 58% (95% CI 44 to 71%) of the participants in Malawi and 32% (95% CI 20 to 46%) of the participants in San Francisco. Aminoglycosides resistance genes were also common on the ocular surface with 58% (95% CI 44 to 71%) prevalence in Malawi and 21% (95% CI 12 to 35%) in San Francisco. AMR was associated with poorer visual outcomes in a subset of patients.

conclusionsAs determined by RNA-seq, ocular surface AMR gene mutations are common in patients with infectious keratitis. Surveillance may be important for infectious keratitis treatment selection as well as providing guidance for antibiotic stewardship.

Indexed as

Anti-Bacterial AgentsDrug Resistance, BacterialKeratitisAdultAgedCaliforniaConjunctivaCorneaFemaleHumansMalawiMaleMiddle AgedMutationYoung AdultAnti-Bacterial Agentsaminoglycoside resistanceantimicrobial resistanceinfectious keratitismacrolide resistanceMalawiRNA-deep sequence analysis

Identifiers

PMID40296816
PMCPMC12585549

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.