ArticleNature genetics2025
Pangenome analysis reveals structural variation associated with seed size and weight traits in peanut.
Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Pan-genome-based resequencing of 2,320 accessions reveals structural variations and accelerates breeding advances in cultivated peanut.Nature genetics · 2026Article
- European ash pangenome reveals widespread structural variation and genetic basis of low ash dieback susceptibility.Nature communications · 2026Article
- The Rise of Plant Pan-Genomes: From Genome Variation to Predictive Breeding.Advanced genetics (Hoboken, N.J.) · 2026Article
- AhBWR15, A Novel RLK Gene, Confers Resistance to Ralstonia solanacearum in Peanut.Plant biotechnology journal · 2026Article
- Pangenomics for Agricultural Breeding: Construction Strategies, Evidence Integration, and Translational Constraints.Biology · 2026Review
- Telomere-to-telomere genome assemblies and population resequencing of diploid and allotetraploid peanut varieties.Nature genetics · 2026Article
- Comparative proteomics analysis of wild and cultivated accessions reveals key candidate proteins associated with seed weight variations in peanut.BMC plant biology · 2026Article
- From structural pangenomes to functional panomics in plants.Molecular biology and evolution · 2026Review
- Subspecies-specific haplotype signatures for customizing blanchability in groundnut (Arachis hypogaea L.) via haplotype-based breeding.Communications biology · 2026Article
- Lineage-specific evolution of regulatory landscapes in a polyploid plant and its diploid progenitors.bioRxiv : the preprint server for biology · 2026Article
- Structural Variation and 3D Genome-Driven DNA/RNA Methylation Divergence Contributing to Cotton Fiber Domestication.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Origin of small chromosome A08 and genome evolution of Arachis species.Nature communications · 2026Article
- PeanutOmics: A comprehensive platform with an integrative multi-omics atlas for peanut research.Plant communications · 2026Article
- Article
- Whole genome-wide association study reveals genetic insights into leaf spot disease resistances and seed germination/dormancy in peanut.Frontiers in plant science · 2026Article
- Pan-genomics of polyploid crops: from complexity to breeding.Frontiers in plant science · 2026Review
- An allelic resolution gene atlas for tetraploid potato provides insights into tuberization and stress resilience.The Plant journal : for cell and molecular biology · 2025Article
- Next-generation translational genomics for developing future crops.Functional & integrative genomics · 2025Review
- Pan-Genome-Based Characterization of the PYL Transcription Factor Family inPlants (Basel, Switzerland) · 2025Article
- From map to blueprint: the plant pan-genome unraveling genetic mysteries and powering precision breeding.Frontiers in plant science · 2025Review
Corrections and comments
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Authors and funding
19 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Peanut (Arachis hypogaea L.) is an important oilseed and food legume crop, with seed size and weight being critical traits for domestication and breeding. However, genomic rearrangements like structural variations (SVs) underlying seed size and weight remain unclear. Here we present a comprehensive pangenome analysis utilizing eight high-quality genomes (two diploid wild, two tetraploid wild and four tetraploid cultivated peanuts) and resequencing data of 269 accessions with diverse seed sizes. We identified 22,222 core or soft-core, 22,232 distributed and 5,643 private gene families. The frequency of SVs in subgenome A is higher than in subgenome B. We identified 1,335 domestication-related SVs and 190 SVs associated with seed size or weight. Notably, a 275-bp deletion in gene AhARF2-2 results in loss of interaction with AhIAA13 and TOPLESS, reducing the inhibitory effect on AhGRF5 and promoting seed expansion. This high-quality pangenome serves as a fundamental resource for the genetic enhancement of peanuts and other legume crops.
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