Evidence map›Paper›PMID 40295814›Full record

ArticleNpj viruses2024

Nucleotide sequence as key determinant driving insertions at influenza A virus hemagglutinin cleavage sites.

Monique I Spronken, Mathis Funk, Alexander P Gultyaev, Anja C M de Bruin, Ron A M Fouchier, Mathilde Richard

Abstract read
In one paragraph

Article in Npj viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Monique I SpronkenDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.
Mathis FunkDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.
Alexander P GultyaevDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.
Anja C M de BruinDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.
Ron A M FouchierDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.
Mathilde RichardDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands. m.richard@erasmusmc.nl.

Funding

HORIZON EUROPE European Research Council Delta-Flu; 727922Nederlandse Organisatie voor Wetenschappelijk Onderzoek OCENW.M.21.150Nederlandse Organisatie voor Wetenschappelijk Onderzoek OCENW.XS22.1.121NIAID NIH HHS HHSN272201400008CZonMw 04510012010056
6 · The paper itself

Abstract

Highly pathogenic avian influenza viruses (HPAIVs) emerge from H5 and H7 low pathogenic avian influenza viruses (LPAIVs), most frequently upon insertions of nucleotides coding for basic amino acids at the cleavage site (CS) of the hemagglutinin (HA). The exact molecular mechanism(s) underlying this genetic change and reasons underlying the restriction to H5 and H7 viruses remain unknown. Here, we developed a novel experimental system based on frame repair through insertions or deletions (indels) of HAs with single nucleotide deletions. Indels were readily detected in a consensus H5 LPAIV CS at low frequency, which was increased upon the introduction of only one substitution leading to a longer stretch of adenines at the CS. In contrast, we only detected indels in H6 when multiple nucleotide substitutions were introduced. These data show that nucleotide sequence is a key determinant of insertions in the HA CS, and reveal novel insights about the subtype-specificity of HPAIV emergence.

Identifiers

PMID40295814
PMCPMC11721075

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.