Evidence map›Paper›PMID 40295559›Full record

ArticleNature communications2025

Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome.

Miranda C Mudge, Michael Riffle, Gabriella Chebli, Deanna L Plubell, Tatiana A Rynearson, William S Noble, Emma Timmins-Schiffman, Julia Kubanek, Brook L Nunn

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Miranda C MudgeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-3769-5937
Michael RiffleDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1633-8607
Gabriella ChebliSchool of Biological Sciences, Georgia Institute of Technology, Parker H. Petit Institute for Bioengineering and Bioscience, Atlanta, GA, USA.
Deanna L PlubellDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-6580-8073
Tatiana A RynearsonGraduate School of Oceanography, University of Rhode Island, Kingston, RI, USA.ORCID http://orcid.org/0000-0003-2951-0066
William S NobleDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-7283-4715
Emma Timmins-SchiffmanDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Julia KubanekSchool of Biological Sciences, Georgia Institute of Technology, Parker H. Petit Institute for Bioengineering and Bioscience, Atlanta, GA, USA.
Brook L NunnDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. brookh@uw.edu.ORCID http://orcid.org/0000-0002-7361-4359

Funding

Using microbiomes as microsensors to forecast toxic algae bloomsR21ES034337 · NIEHS · UNIVERSITY OF WASHINGTON · PI NUNN, BROOK LEANNE · 2022 to 2023
$443k
Modeling Microbiome Peptides Using Metaproteomics for the Prediction of Harmful Algal BloomsF31ES032733 · NIEHS · UNIVERSITY OF WASHINGTON · PI MUDGE, MIRANDA · 2021 to 2023
$125k
NIEHS NIH HHS F31 ES032733NIEHS NIH HHS R21 ES034337U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) F31ES032733-01A1U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R21ESO34337
6 · The paper itself

Abstract

Harmful algal blooms (HABs) have become a worldwide environmental and human health problem, stressing the urgent need for a reliable forecasting tool. Dynamic interactions between algae, including harmful algae, and bacteria play a large role regulating water chemistry. Free-living bacteria quickly respond to small physical and/or chemical environmental changes by adjusting their proteome. We hypothesize that this response is detectable at the peptide level and occurs before rapid phytoplankton growth characteristic of harmful bloom events. To characterize the microbiome's physiological changes preceding bloom onset, we collected and analyzed a high-resolution metaproteomic time series of a free-living microbiome in a coastal ecosystem. We confirm that twelve candidate HAB biomarkers are detectable, quantifiable, and correlated across two pre-bloom periods. This study identifies proteomic shifts in bacterial peptides which may be used as predictive biomarkers for forecasting harmful algal bloom initiation, potentially mitigating detrimental algal bloom outcomes in the future.

Indexed as

Harmful Algal BloomMicrobiotaSeawaterBacteriaBiomarkersEcosystemEutrophicationOceans and SeasPhytoplanktonProteomeProteomicsBiomarkersProteome

Identifiers

PMID40295559
PMCPMC12037917

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.