Evidence map›Paper›PMID 40295473›Full record

ArticleNature communications2025

Epigenetic silencing of DNA sensing pathway by FOXM1 blocks stress ligand-dependent antitumor immunity and immune memory.

Santosh Timilsina, Jian Yu Huang, Nourhan Abdelfattah, Daisy Medina, Deepika Singh, Shahad Abdulsahib, Panneerdoss Subbarayalu, Trong Phat Do, Prabhakar Pitta Venkata, Saif Nirzhor and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Santosh TimilsinaGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Jian Yu Huang *Greehey Children's Cancer Research Institute, San Antonio, TX, USA.
Nourhan Abdelfattah *Department of Neurology, Houston Methodist Research Institute, Houston, TX, USA.ORCID http://orcid.org/0000-0002-0556-0977
Daisy MedinaGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Deepika SinghGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Shahad AbdulsahibGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Panneerdoss SubbarayaluGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Trong Phat DoGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Prabhakar Pitta VenkataGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Saif NirzhorGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Jack ProchnauGreehey Children's Cancer Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-3243-6346
Mukund BhandariDepartment of Pathology, UT Southwestern Medical Center, Dallas, TX, USA.
Siyuan ZhengGreehey Children's Cancer Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-1031-9424
Yidong ChenGreehey Children's Cancer Research Institute, San Antonio, TX, USA.
Gang HuangDepartment of Cell Systems and Anatomy, UT Health San Antonio, San Antonio, TX, USA.
Neelam MukherjeeDepartment of Urology, UT Health, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-1974-6075
Robert HromasDepartment of Medicine, UT Health, San Antonio, TX, USA.
Patrick SungGreehey Children's Cancer Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-1396-9040
Virginia KaklamaniDepartment of Medicine, UT Health, San Antonio, TX, USA.
Ratna VadlamudiDepartment of Obstetrics and Gynecology, UT Health San Antonio, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-2849-4076
Nu ZhangAudie L. Murphy Division, South Texas Veterans Health Care System, San Antonio, TX, USA.ORCID http://orcid.org/0000-0001-9695-210X
Manjeet K RaoGreehey Children's Cancer Research Institute, San Antonio, TX, USA. raom@uthscsa.edu.ORCID http://orcid.org/0000-0001-7573-2677

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Cancer Biology Training ProgramT32CA148724 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Pei Wang, Feng-Chun Yang · 2011 to 2026
$3.3M
EEPD1 Repair of Stressed Replication ForksR01CA205224 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Robert A Hromas · 2016 to 2026
$3.3M
South Texas Medical Scientist Training Program (STX-MSTP)T32GM145432 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Jose E Cavazos, Ratna K Vadlamudi · 2023 to 2026
$2.3M
FoXM1 inhibition: a novel therapeutic avenue to treat breast cancersR01CA239227 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI RAO, MANJEET KUMAR, VADLAMUDI, RATNA K · 2020 to 2024
$2.1M
miRNAs:Safe and effective therapeutic adjuvants for treating drug resistant TNBCR01CA179120 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI RAO, MANJEET KUMAR, VADLAMUDI, RATNA K · 2015 to 2019
$1.7M
South Texas Medical Scientist Training Program (STX-MSTP)T32GM113896 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CAVAZOS, JOSE E · 2018 to 2022
$1.1M
Illumina NovaSeq 6000 Sequencing SystemS10OD030311 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2021 to 2021
$600k
Epigenetics, DNA repair and Genomics (EDGe) Training Program in CancerT32CA279363 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Robin Jean Leach, Anna L Malkova · 2024 to 2026
$493k
BLRD VA I01 BX005955BLRD VA I01 BX006280NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA179120NCI NIH HHS R01 CA205224NCI NIH HHS R01 CA239227NCI NIH HHS T32 CA148724NCI NIH HHS T32 CA279363NIGMS NIH HHS T32 GM113896NIGMS NIH HHS T32 GM145432NIH HHS S10 OD030311U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA179120U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA239227
6 · The paper itself

Abstract

The interplay between tumor cells and the microenvironment significantly influences cancer progression. Here, we report a significant role of the transcription factor FOXM1 in shaping the tumor immune landscape. Single-cell sequencing reveals that tumor-intrinsic FOXM1 creates an immune-suppressive tumor microenvironment by inhibiting expression of stress ligands (including ULBP1) on cancer cells, thereby blocking NKG2D-NKG2DL interactions critical for priming natural killer- and T cell-mediated cytotoxicity of cancer cells. FOXM1 suppresses ULBP1 expression by epigenetically silencing the DNA-sensing protein STING using a DNMT1-UHRF1 complex, which in turn inhibits the unfolded protein response protein CHOP from activating ULBP1. Importantly, cancer patients with higher levels of FOXM1 and DNMT1, and lower levels of STING and ULBP1, have worse survival and are less responsive to immunotherapy. Collectively, our findings provide key insight into how a tumor-intrinsic transcription factor epigenetically shapes the tumor immune microenvironment, with strong implications for refining existing and designing new cancer immunotherapies.

Indexed as

Epigenesis, GeneticForkhead Box Protein M1Immunologic MemoryNeoplasmsAnimalsCell Line, TumorDNA (Cytosine-5-)-Methyltransferase 1FemaleGene Expression Regulation, NeoplasticGene SilencingHumansImmunotherapyKiller Cells, NaturalLigandsMembrane ProteinsMiceDNA (Cytosine-5-)-Methyltransferase 1DNMT1 protein, humanForkhead Box Protein M1FOXM1 protein, humanKLRK1 protein, humanLigandsMembrane ProteinsNK Cell Lectin-Like Receptor Subfamily KSTING1 protein, humanSTING Protein

Identifiers

PMID40295473
PMCPMC12037779

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.