Evidence map›Paper›PMID 40295206›Full record

ArticleNeuro-oncology2025

DNA methylation profiling of pituitary neuroendocrine tumors identifies distinct clinical and pathological subtypes based on epigenetic differentiation.

Sarra Belakhoua, Varshini Vasudevaraja, Chanel Schroff, Kristyn Galbraith, Misha Movahed-Ezazi, Jonathan Serrano, Yiying Yang, Daniel Orringer, John G Golfinos, Chandra Sen and 3 more

Abstract read
In one paragraph

Article in Neuro-oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. International journal of ophthalmology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sarra BelakhouaDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.ORCID 0009-0008-0917-4759
Varshini VasudevarajaDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Chanel SchroffDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Kristyn GalbraithDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Misha Movahed-EzaziDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.ORCID 0000-0002-9249-5498
Jonathan SerranoDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.ORCID 0000-0002-2839-9573
Yiying YangDepartment of Pathology, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Daniel OrringerDepartment of Neurosurgery, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
John G GolfinosDepartment of Neurosurgery, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.ORCID 0000-0003-4221-0180
Chandra SenDepartment of Neurosurgery, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Donato PacioneDepartment of Neurosurgery, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.
Nidhi AgrawalDepartment of Medicine, NYU Grossman School of Medicine, NYU Langone Health, New York, New York 10016, USA.ORCID 0000-0001-6024-9236
Matija SnuderlLaura and Isaac Perlmutter Cancer Center, NYU Langone Health, New York, New York 10016, USA.ORCID 0000-0003-0752-0917

Funding

NIH HHS R01-CA226527NINDS NIH HHS R01-NS122987
6 · The paper itself

Abstract

backgroundPituitary neuroendocrine tumors (PitNETs) are the most common intracranial neuroendocrine tumors. PitNETs can be challenging to classify, and current recommendations include a large immunohistochemical panel to differentiate among 14 WHO-recognized categories.

methodsIn this study, we analyzed clinical, immunohistochemical, and DNA methylation data of 118 PitNETs to develop a clinicomolecular approach to classifying PitNETs and identifying epigenetic classes.

resultsCNS DNA methylation classifier has an excellent performance in recognizing PitNETs and distinguishing the 3 lineages when the calibrated score is ≥ 0.3. Unsupervised DNA methylation analysis separated PitNETs into 2 major clusters. The first was composed of silent gonadotrophs, which form a biologically distinct group of PitNETs characterized by clinical silencing, weak hormonal expression on immunohistochemistry, and simple copy number profile. The second major cluster was composed of corticotrophs and Pit1 lineage PitNETs, which could be further classified using DNA methylation into distinct subclusters that corresponded to clinically functioning and silent tumors and are consistent with transcription factor expression. Analysis of promoter methylation patterns correlated with lineage for corticotrophs and Pit1 lineage subtypes. However, the gonadotrophic genes did not show a distinct promoter methylation pattern in gonadotroph tumors compared to other lineages. Promoter of the NR5A1 gene, which encodes SF1, was hypermethylated across all PitNETs clinical and molecular subtypes including gonadotrophs with strong SF1 protein expression indicating alternative epigenetic regulation.

conclusionOur findings suggest that classification of PitNETs may benefit from DNA methylation for clinicopathological stratification.

Indexed as

Biomarkers, TumorDNA MethylationEpigenesis, GeneticNeuroendocrine TumorsPituitary NeoplasmsAdultAgedFemaleHumansMaleMiddle AgedPrognosisPromoter Regions, GeneticYoung AdultBiomarkers, TumorDNA methylationpituitary neuroendocrine tumorspromoter methylationunsupervised hierarchical clustering

Identifiers

PMID40295206
PMCPMC12526055

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.