Evidence map›Paper›PMID 40293991›Full record

ArticlePloS one2025

Environmental persistence of nontyphoidal Salmonella in an urban informal settlement in Nairobi, Kenya.

Collins K Kebenei, David Onyango, Kelvin Kering, Cecilia Mbae, Susan Kavai, Michael Muraya, Celestine Wairimu, Georgina Odityo, Kristin Weber, Michael Pietsch and 9 more

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Virulence and antimicrobial resistance inFrontiers in microbiology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Collins K KebeneiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.ORCID 0000-0001-8465-2804
David OnyangoSchool of Physical and Biological Sciences, Maseno University, Maseno, Kenya.
Kelvin KeringCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Cecilia MbaeCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Susan KavaiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Michael MurayaCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.ORCID 0000-0003-1448-837X
Celestine WairimuCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Georgina OdityoCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Kristin WeberDepartment of Infectious Diseases, Robert Koch Institute, Wernigerode, Germany.
Michael PietschDepartment of Infectious Diseases, Robert Koch Institute, Wernigerode, Germany.
Tanja PilzGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Oliver DrechselGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Andrea ThürmerGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Torsten SemmlerGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Stephan FuchsGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Sandra SimonDepartment of Infectious Diseases, Robert Koch Institute, Wernigerode, Germany.
Antje FliegerDepartment of Infectious Diseases, Robert Koch Institute, Wernigerode, Germany.
Lothar H WielerGenome Competence Center, Robert Koch Institute, Berlin, Germany.
Samuel KariukiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.ORCID 0000-0003-3209-9503

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-typhoidal Salmonella (NTS) presents a considerable health threat to children in low-resource settings, where clean water, sanitation, and hygiene are often inadequate. However, the environmental factors influencing NTS persistence and spread remain poorly understood. We utilized a case-control approach to investigate environmental factors associated with NTS infection in children living in Nairobi's informal settlements between August 2022 and July 2023. Stool samples were collected from febrile children, with or without diarrhea, who visited healthcare facilities. The study included 42 laboratory-confirmed NTS-positive cases and 42 NTS-negative children from the same community. Environmental samples, including drinking water, open drains, soil, and household effluent, were collected from both case and control households, in addition to raw sewage from main sewer-line convergence points. Conventional microbiological culture and quantitative Polymerase Chain Reaction techniques were employed for NTS detection, with genomic sequencing used for strain characterization. Environmental samples from case households showed a higher NTS contamination rate of 33.3% (42/126) compared to control households of 7.2% (9/126). Higher odds of NTS infection in children were associated with household environmental factors, particularly exposure to household effluent (OR = 7.7, 95% CI: 2.18-34.82, p = 0.0005), drinking water (OR = 6.4, 95% CI: 1.57-37.76, p = 0.0055), and soil (OR = 5.4, 95% CI: 1.01-54.28, p = 0.0485). Genomic analysis revealed a common strain, Salmonella Enteritidis ST11, in clinical and environmental isolates. These findings highlight the plausible role of the household environment as a reservoir for NTS, perpetuating infection cycles within the community. Addressing this challenge requires a multifaceted approach, including improved sanitation infrastructure, environmental monitoring, and integrated public health interventions to reduce NTS exposure and transmission in high-risk populations.

Indexed as

SalmonellaSalmonella InfectionsCase-Control StudiesChildChild, PreschoolFamily CharacteristicsFecesFemaleHumansInfantKenyaMaleSanitationSewageUrban PopulationSewage

Identifiers

PMID40293991
PMCPMC12036858

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.