Evidence map›Paper›PMID 40293945›Full record

ArticleJournal of visualized experiments : JoVE2025

Isolation of Lung Retinoid-Containing Cells by Cell Sorting.

Seth Calindas, Olga Ilnytska, Igor Shmarakov

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Seth CalindasDepartment of Animal Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey; Undergraduate Program in Biochemistry, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey.
Olga IlnytskaDepartment of Animal Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey; Rutgers Center for Lipid Research; Rutgers Center for Environmental Exposures & Disease.
Igor ShmarakovDepartment of Animal Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey; Rutgers Center for Lipid Research; Rutgers Center for Environmental Exposures & Disease; ishmarakov@sebs.rutgers.edu.

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Translational Research Support CoreP30ES005022 · NIEHS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PANOS G. GEORGOPOULOS · 1988 to 2026
$47.4M
Vitamin A metabolism in the adult lungR01HL171112 · NHLBI · RUTGERS, THE STATE UNIV OF N.J. · PI Igor Shmarakov · 2024 to 2026
$2.0M
NCI NIH HHS P30 CA072720NHLBI NIH HHS R01 HL171112NIEHS NIH HHS P30 ES005022
6 · The paper itself

Abstract

Retinoids (vitamin A and its metabolites) are an essential lipid component of the alveolar microenvironment, and cell-type specific retinoid metabolism is required to maintain the functional health of the developing and adult lungs. Lung cells utilize specific pathways, allowing for the efficient uptake of circulating retinoids from the blood as retinol (ROH), followed by intracellular stepwise conversion of ROH into the transcriptionally active retinoid species, all-trans-retinoic acid (ATRA). ATRA-mediated (or retinoid-mediated) signaling is crucial for regulating lung alveolarization, surfactant production, angiogenesis, permeability, and immunity. Importantly, specific lung cells, including fibroblasts, can accumulate retinoids in the form of retinyl esters (RE), which can be stored or further mobilized as ROH for transfer to the neighboring cells when needed. Lung retinoid-containing cells can be isolated and collected from the single-cell suspension of digested lungs by making use of retinoid autofluorescence (the emission at 455 nm upon excitation at 350 nm) and by employing fluorescence-activated cell sorting (FACS). Additional cell-specific in vivo labeling of lung cells with red fluorescent protein allows isolating and collecting specific retinoid-containing lung cell populations. The collected cells can be directly analyzed or cultured for further analyses of cell morphology, gene expression, and responsiveness to pharmacological manipulations. This technique of isolation and application is important for animal model studies of lung health and lung injury to gain deeper insight into cellular aspects of retinoid metabolism in the lungs and lipid-mediated cellular communications.

Indexed as

Flow CytometryLungRetinoidsAnimalsLuminescent ProteinsMiceVitamin ALuminescent ProteinsRetinoidsVitamin A

Identifiers

PMID40293945
PMCPMC12428509

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.