Evidence map›Paper›PMID 40292231›Full record

ReviewFrontiers in genome editing2025

Unraveling the future of genomics: CRISPR, single-cell omics, and the applications in cancer and immunology.

A Vipin Menon, Bicna Song, Lumen Chao, Diksha Sriram, Pamela Chansky, Ishnoor Bakshi, Jane Ulianova, Wei Li

Abstract readReview
In one paragraph

Review in Frontiers in genome editing, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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  8. A unified genetic perturbation language for human cellular programming.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

A Vipin MenonCenter for Genetic Medicine Research, Children's National Hospital, Washington, DC, DC, United States.
Bicna SongCenter for Genetic Medicine Research, Children's National Hospital, Washington, DC, DC, United States.
Lumen ChaoCenter for Genetic Medicine Research, Children's National Hospital, Washington, DC, DC, United States.
Diksha SriramThe George Washington University, Washington, DC, DC, United States.
Pamela ChanskyCenter for Genetic Medicine Research, Children's National Hospital, Washington, DC, DC, United States.
Ishnoor BakshiThe George Washington University, Washington, DC, DC, United States.
Jane UlianovaIntegrated Biomedical Sciences (IBS) Program, The George Washington University, Washington, DC, DC, United States.
Wei LiCenter for Genetic Medicine Research, Children's National Hospital, Washington, DC, DC, United States.

Funding

Integrative genomic and functional genomic studies to connect variant to function for CAD GWAS lociR01HL168174 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wei Li, EDOARDO MARCORA · 2023 to 2026
$3.1M
Modeling Heterogenous Outcomes in Functional Genetic Screens Using Single-cell Genomics as ReadoutsR01HG010753 · NHGRI · CHILDREN'S RESEARCH INSTITUTE · PI LI, WEI · 2019 to 2023
$2.5M
NHGRI NIH HHS R01 HG010753NHLBI NIH HHS R01 HL168174
6 · The paper itself

Abstract

The CRISPR system has transformed many research areas, including cancer and immunology, by providing a simple yet effective genome editing system. Its simplicity has facilitated large-scale experiments to assess gene functionality across diverse biological contexts, generating extensive datasets that boosted the development of computational methods and machine learning/artificial intelligence applications. Integrating CRISPR with single-cell technologies has further advanced our understanding of genome function and its role in many biological processes, providing unprecedented insights into human biology and disease mechanisms. This powerful combination has accelerated AI-driven analyses, enhancing disease diagnostics, risk prediction, and therapeutic innovations. This review provides a comprehensive overview of CRISPR-based genome editing systems, highlighting their advancements, current progress, challenges, and future opportunities, especially in cancer and immunology.

Indexed as

Cas9clinical researchdeep learningmachine learningPerturb-seqsingle-cell CRISPR screentherapeutics

Identifiers

PMID40292231
PMCPMC12021818

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.