Evidence map›Paper›PMID 40291647›Full record

ArticlebioRxiv : the preprint server for biology2025

Histone H3 tail charge patterns govern nucleosome condensate formation and dynamics.

Erin F Hammonds, Anurag Singh, Krishna K Suresh, Sean Yang, Sarah S Meidl Zahorodny, Ritika Gupta, Davit A Potoyan, Priya R Banerjee, Emma A Morrison

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Erin F HammondsDepartment of Biochemistry, Medical College of Wisconsin, 8701 Watertown Plank Rd., Milwaukee, WI 53226.
Anurag SinghDepartment of Physics, The State University of New York at Buffalo, Buffalo, NY 14260.
Krishna K SureshDepartment of Chemistry, Iowa State University, Ames, IA 50011.
Sean YangDepartment of Chemistry, Iowa State University, Ames, IA 50011.
Sarah S Meidl ZahorodnyDepartment of Biochemistry, Medical College of Wisconsin, 8701 Watertown Plank Rd., Milwaukee, WI 53226.
Ritika GuptaDepartment of Physics, The State University of New York at Buffalo, Buffalo, NY 14260.
Davit A PotoyanDepartment of Chemistry, Iowa State University, Ames, IA 50011.ORCID 0000-0002-5860-1699
Priya R BanerjeeDepartment of Physics, The State University of New York at Buffalo, Buffalo, NY 14260.ORCID 0000-0002-6169-1461
Emma A MorrisonDepartment of Biochemistry, Medical College of Wisconsin, 8701 Watertown Plank Rd., Milwaukee, WI 53226.ORCID 0000-0001-6722-7961

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
Quantifying Physiologic and Pathologic Viscoelastic Phases of Biomolecular Condensates by Correlative Force and Fluorescence MicroscopyR35GM138186 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI BANERJEE, PRIYA R. · 2020 to 2025
$4.4M
Multi-scale computational investigation of functions and mechanisms of protein-RNA phase separation.R35GM138243 · NIGMS · IOWA STATE UNIVERSITY · PI Davit POTOYAN · 2020 to 2026
$2.4M
The role of histone tails in chromatin structure and gene regulationR35GM142594 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI MORRISON, EMMA ANTONINA · 2021 to 2025
$2.1M
High Performance Digital Console and Sample JetS10OD020000 · OD · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2015 to 2015
$600k
NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R35 GM138186NIGMS NIH HHS R35 GM138243NIGMS NIH HHS R35 GM142594NIH HHS S10 OD020000
6 · The paper itself

Abstract

Emerging models of nuclear organization suggest that chromatin forms functionally distinct microenvironments through phase separation. As chromatin architecture is organized at the level of the nucleosome and regulated by histone post-translational modifications, we investigated how these known regulatory mechanisms influence nucleosome phase behavior. By systematically altering charge distribution within the H3 tail, we found that specific regions modulate the phase boundary and tune nucleosome condensate viscosity, as revealed by microscopy-based assays, microrheology, and simulations. Nuclear magnetic resonance relaxation experiments showed that H3 tails remain dynamically mobile within condensates, and their mobility correlates with condensate viscosity. These results demonstrate that the number, identity, and spatial arrangement of basic residues in the H3 tail critically regulate nucleosome phase separation. Our findings support a model in which nucleosomes, through their intrinsic properties and modifications, actively shape the local chromatin microenvironment-providing new insight into the histone language in chromatin condensates.

Identifiers

PMID40291647
PMCPMC12027143

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.