Evidence map›Paper›PMID 40288374›Full record

ArticleMolecular cell2025

Cyanobacterial Argonautes and Cas4 family nucleases cooperate to interfere with invading DNA.

Pilar Bobadilla Ugarte, Stefanie Halter, Sumanth K Mutte, Clint Heijstek, Theophile Niault, Ilya Terenin, Patrick Barendse, Balwina Koopal, Mark Roosjen, Sjef Boeren and 4 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Pilar Bobadilla UgarteLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Stefanie HalterDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland.
Sumanth K MutteLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Clint HeijstekLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Theophile NiaultLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Ilya TereninDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden.
Patrick BarendseLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Balwina KoopalLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Mark RoosjenLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Sjef BoerenLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Vasili HauryliukDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden; Virus Centre, Lund University, Lund, Sweden; University of Tartu, Institute of Technology, 50411 Tartu, Estonia; Science for Life Laboratory, Lund, Sweden.
Martin JinekDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland.
Adrie H WestphalLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands.
Daan C SwartsLaboratory of Biochemistry, Wageningen University, 6708 WE Wageningen, the Netherlands. Electronic address: daan.swarts@wur.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prokaryotic Argonaute proteins (pAgos) from the long-A clade are stand-alone immune systems that use small interfering DNA (siDNA) guides to recognize and cleave invading plasmid and virus DNA. Certain long-A pAgos are co-encoded with accessory proteins with unknown functions. Here, we show that cyanobacterial long-A pAgos act in conjunction with Argonaute-associated Cas4 family enzyme 1 (ACE1). Structural and biochemical analyses reveal that ACE1-associated pAgos mediate siDNA-guided DNA interference, akin to stand-alone pAgos. ACE1 is structurally homologous to the nuclease domain of bacterial DNA repair complexes and acts as a single-stranded DNA endonuclease that processes siDNA guides. pAgo and ACE1 form a heterodimeric long-A pAgo-ACE1 (APACE1) complex, which modulates ACE1 activity. Although ACE1-associated pAgos alone interfere with plasmids and bacteriophages, plasmid interference is boosted when pAgo and ACE1 are co-expressed. Our study reveals that pAgo-mediated immunity is enhanced by accessory proteins and broadens our mechanistic understanding of how pAgo systems interfere with invading DNA.

Indexed as

Argonaute ProteinsBacterial ProteinsCyanobacteriaDNA, BacterialBacteriophagesDNA RepairDNA, ViralModels, MolecularPlasmidsArgonaute ProteinsBacterial ProteinsDNA, BacterialDNA, ViralArgonauteCas4cyanobacteriahost defensenucleasepAgoPD-(D/E)xKprokaryotic immunity

Identifiers

PMID40288374
PMCPMC12094033

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.