Evidence map›Paper›PMID 40284643›Full record

ArticleMicroorganisms2025

Microspatial Heterogeneities and the Absence of Postmortem Contamination in Alzheimer's Disease Brain Microbiota: An Alzheimer's Pathobiome Initiative (AlzPI) Study.

Myat N Thwe, Yves Moné, Bhaswati Sen, Samuel Czerski, Ahmed Azad, Joshua P Earl, Donald C Hall, Garth D Ehrlich

Abstract read
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Myat N ThweSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA 19104, USA.
Yves MonéDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.
Bhaswati SenDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.
Samuel CzerskiDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.
Ahmed AzadDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.
Joshua P EarlDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.
Donald C HallDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.ORCID 0000-0003-4849-3740
Garth D EhrlichDepartment of Microbiology and Immunology, Drexel University College of Medicine, Drexel University, Philadelphia, PA 19102, USA.ORCID 0000-0003-0341-8771

Funding

Bill and Marian Cook Foundation 002Drexel University College of Medicine, Department of Microbiology and Immunology and the Institute for Molecular Medicine and Infectious Disease 003Dr. James Truchard 001
6 · The paper itself

Abstract

The discovery of profound differences in the brain microbiota of Alzheimer's disease (AD) patients and age-matched controls (AMCs) raised questions of postmortem contamination and bacterial transport processes which could be informed by microspatial heterogeneities. We performed semiquantitative species-specific bacterial analyses on multiple micro biopsies from each of the 30 brain specimens (AD and controls). We trimmed ~1 mm of each specimen's edges for surface contaminants and made multiple sterile biopsy punches of the resultant core of each specimen. To identify species-specific abundances, we used our validated, semiquantitative, full-length 16S rRNA gene pan-domain amplification protocol followed by high-fidelity circular consensus sequencing performed on a Pacific Biosciences Sequel IIe instrument. Statistical analyses showed no significant increase in bacterial abundance on trimmed surfaces compared to core specimens, including

Indexed as

Alzheimer’s diseaseBayesian statisticscontaminationDirichlet-multinomial modelingDNA sequencingmicrobiomepathobiomepolymerase chain reaction

Identifiers

PMID40284643
PMCPMC12029928

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.