Evidence map›Paper›PMID 40281705›Full record

ArticleBioengineering (Basel, Switzerland)2025

Model-Based Characterization of the Metabolism of Recombinant Adeno-Associated Virus (rAAV) Production via Human Embryonic Kidney (HEK293) Cells.

Somaiyeh Khodadadi Karimvand, Miroslava Cuperlovic-Culf, Amine A Kamen, Miodrag Bolic

Abstract read
In one paragraph

Article in Bioengineering (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Somaiyeh Khodadadi KarimvandSchool of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON K1N 6N5, Canada.
Miroslava Cuperlovic-CulfDigital Technologies Research Center, National Research Council, Ottawa, ON K1A 0R6, Canada.ORCID 0000-0002-9483-8159
Amine A KamenDepartment of Bioengineering, McGill University, Montreal, QC H3A 0E9, Canada.ORCID 0000-0001-9110-8815
Miodrag BolicSchool of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON K1N 6N5, Canada.

Funding

National Research Council Canada AI4D-103-1
6 · The paper itself

Abstract

In this paper, we present a kinetic-metabolic model describing adeno-associated virus (AAV) production via HEK293 cells that encompasses the main metabolic pathways, namely, glycolysis, tricarboxylic acid cycle (TCA), pyruvate fates, the pentose phosphate pathway, anaplerotic reaction, amino acid metabolism, nucleotides synthesis, biomass synthesis, and the metabolic pathways of protein synthesis of the AAV (capsid and Rep proteins). For the modeling, Michaelis-Menten kinetics was assumed to define the metabolic model. A dataset from bioreactor cultures containing metabolite profiles of adeno-associated virus 6 (AAV6) production via triple transient transfection in a low-cell-density culture, including the concentration profiles of glutamine, glutamic acid, glucose, lactate, and ammonium, was utilized for fitting and computing the model parameters. The model that resulted from the adjusted parameters defined the experimental data well. Subsequently, a Sobol-based global sensitivity analysis procedure was applied to determine the most sensitive parameters in the final model.

Indexed as

adeno-associated virusesglobal sensitivity analysismetabolic modelMichaelis–Menten kineticsmodel fittingoptimization

Identifiers

PMID40281705
PMCPMC12024435

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.