Evidence map›Paper›PMID 40278365›Full record

ArticleMetabolites2025

Influence of Amino Acids on Quorum Sensing-Related Pathways in

Javier Alejandro Delgado-Nungaray, Luis Joel Figueroa-Yáñez, Eire Reynaga-Delgado, Mario Alberto García-Ramírez, Karla Esperanza Aguilar-Corona, Orfil Gonzalez-Reynoso

Abstract read
In one paragraph

Article in Metabolites, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Predicting Strain-Specific Metabolic Capabilities in the GenusComputational and structural biotechnology journal · 2026
    Article
  3. Rational Targeting and gRNA Design for Enhancing Quorum Quenching inComputational and structural biotechnology journal · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Javier Alejandro Delgado-NungarayChemical Engineering Department, University Center for Exact and Engineering Sciences, University of Guadalajara, Blvd. M. García Barragán # 1451, Guadalajara 44430, Mexico.ORCID 0009-0004-3856-4714
Luis Joel Figueroa-YáñezIndustrial Biotechnology Unit, Center for Research and Assistance in Technology and Design of the State of Jalisco, A.C. (CIATEJ), Zapopan 45019, Mexico.ORCID 0000-0002-7283-8035
Eire Reynaga-DelgadoPharmacobiology Department, University Center for Exact and Engineering Sciences, University of Guadalajara, Blvd. M. García Barragán # 1451, Guadalajara 44430, Mexico.ORCID 0000-0002-8769-7407
Mario Alberto García-RamírezElectronics Department, University Center for Exact and Engineering Sciences, University of Guadalajara, Blvd. M. García Barragán # 1451, Guadalajara 44430, Mexico.ORCID 0000-0003-1947-9595
Karla Esperanza Aguilar-CoronaFood Engineering and Biotechnology, University Center for Exact and Engineering Sciences, University of Guadalajara, Blvd. M. García Barragán # 1451, Guadalajara 44430, Mexico.
Orfil Gonzalez-ReynosoChemical Engineering Department, University Center for Exact and Engineering Sciences, University of Guadalajara, Blvd. M. García Barragán # 1451, Guadalajara 44430, Mexico.ORCID 0000-0002-7721-1127

Funding

Consejo Nacional de Humanidades, Ciencias y Tecnologías 1267568
6 · The paper itself

Abstract

BACKGROUND/

objectivesAmino acids (AAs) play a critical role in diseases such as cystic fibrosis where

methodsThe updated GEM, iJD1249, was reconstructed by using protocols to integrate data from previous models and refined with well-standardized in silico media (LB, M9, and SCFM) to improve flux balance analysis accuracy. The model was used to explore the metabolic impact of D-Met, D-Ala, D-Glu, D-Ser, L-His, L-Glu, L-Arg, and L-Ornithine (L-Orn) at 5 and 50 mM in QS-related pathways, focusing on the effects on bacterial growth and carbon flux distributions.

resultsAmong the tested AAs, D-Met was the only one that did not enhance the growth rate of

conclusionsOur results shed some light on the metabolic impact of AAs on QS-related pathways and their potential role in

Indexed as

antimicrobial resistanceD- and L-amino acidsflux balance analysisgenome-scale metabolic modelquorum sensing

Identifiers

PMID40278365
PMCPMC12029727

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.