Evidence map›Paper›PMID 40273912›Full record

ArticleCell2025

Encoding and decoding selectivity and promiscuity in the human chemokine-GPCR interaction network.

Andrew B Kleist, Martyna Szpakowska, Lindsay J Talbot, Greg Slodkowicz, Duccio Malinverni, Monica A Thomas, Kyler S Crawford, Daniel J McGrail, Acacia F Dishman, Michael J Wedemeyer and 7 more

Abstract read
In one paragraph

Article in Cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Andrew B KleistDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Medical Scientist Training Program, Medical College of Wisconsin, Milwaukee, WI, USA; MRC Laboratory of Molecular Biology, Cambridge, UK. Electronic address: andrew.b.kleist@gmail.com.
Martyna SzpakowskaImmuno-Pharmacology and Interactomics, Department of Infection and Immunity, Luxembourg Institute of Health, Esch-sur-Alzette, Luxembourg.
Lindsay J TalbotDepartment of Bone Marrow Transplantation and Cellular Therapy, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Greg SlodkowiczMRC Laboratory of Molecular Biology, Cambridge, UK.
Duccio MalinverniMRC Laboratory of Molecular Biology, Cambridge, UK; Center of Excellence for Data-Driven Discovery, Department of Structural Biology, St Jude Children's Research Hospital, Memphis, TN, USA.
Monica A ThomasDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Medical Scientist Training Program, Medical College of Wisconsin, Milwaukee, WI, USA.
Kyler S CrawfordDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Medical Scientist Training Program, Medical College of Wisconsin, Milwaukee, WI, USA.
Daniel J McGrailDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Acacia F DishmanDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Medical Scientist Training Program, Medical College of Wisconsin, Milwaukee, WI, USA.
Michael J WedemeyerDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA.
Madison SluterCenter of Excellence for Data-Driven Discovery, Department of Structural Biology, St Jude Children's Research Hospital, Memphis, TN, USA.
S Stephen YiDepartment of Oncology, Dell Medical School, University of Texas at Austin, Austin, TX, USA; Department of Biomedical Engineering, Cockrell School of Engineering, University of Texas at Austin, Austin, TX, USA.
Nidhi SahniDepartment of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA; Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX, USA; Department of Epigenetics & Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Francis C PetersonDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Protein Foundry, LLC, West Allis, WI, USA; Program in Chemical Biology, Medical College of Wisconsin, Milwaukee, WI, USA; Mellowes Center for Genomic Sciences and Precision Medicine, Medical College of Wisconsin, Milwaukee, WI, USA.
Andy ChevignéImmuno-Pharmacology and Interactomics, Department of Infection and Immunity, Luxembourg Institute of Health, Esch-sur-Alzette, Luxembourg.
Brian F VolkmanDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA; Protein Foundry, LLC, West Allis, WI, USA; Program in Chemical Biology, Medical College of Wisconsin, Milwaukee, WI, USA; Mellowes Center for Genomic Sciences and Precision Medicine, Medical College of Wisconsin, Milwaukee, WI, USA. Electronic address: bvolkman@mcw.edu.
M Madan BabuMRC Laboratory of Molecular Biology, Cambridge, UK; Center of Excellence for Data-Driven Discovery, Department of Structural Biology, St Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: madan.babu@stjude.org.

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Structural Basis for Chemokine FunctionR37AI058072 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI Brian F Volkman · 2020 to 2026
$2.8M
Structure-based inhibition of chemokine signaling in the inflamed pancreasR01DK133247 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI Michael B Dwinell, Brian F Volkman · 2023 to 2026
$2.5M
Deciphering Functional Consequences of Specific and Combinatorial Mutations in Protein Interaction NetworksR35GM137836 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SAHNI, NIDHI · 2020 to 2023
$1.8M
Structure-Function Investigation of Chemokine-GPCR Signaling in Tumor Progression and MetastasisF30CA236182 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI DISHMAN, ACACIA F · 2019 to 2023
$242k
Structural basis of chemokine receptor signaling in tumor progressionF30CA196040 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI KLEIST, ANDREW B · 2016 to 2020
$233k
Determining the Immunological Consequences of DNA Replication Stress Response Defects in Renal Cells Carcinoma to Improve Immunotherapy OutcomesK99CA240689 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MCGRAIL, DANIEL JAMES · 2019 to 2020
$207k
Validating CCL28 as a Target for Novel Asthma Therapies using NMR SpectroscopyF30HL134253 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI THOMAS, MONICA A · 2017 to 2019
$140k
NCI NIH HHS F30 CA196040NCI NIH HHS F30 CA236182NCI NIH HHS K99 CA240689NHLBI NIH HHS F30 HL134253NIAID NIH HHS R37 AI058072NIDDK NIH HHS R01 DK133247NIGMS NIH HHS R35 GM137836NIGMS NIH HHS T32 GM080202
6 · The paper itself

Abstract

In humans, selective and promiscuous interactions between 46 secreted chemokine ligands and 23 cell surface chemokine receptors of the G-protein-coupled receptor (GPCR) family form a complex network to coordinate cell migration. While chemokines and their GPCRs each share common structural scaffolds, the molecular principles driving selectivity and promiscuity remain elusive. Here, we identify conserved, semi-conserved, and variable determinants (i.e., recognition elements) that are encoded and decoded by chemokines and their receptors to mediate interactions. Selectivity and promiscuity emerge from an ensemble of generalized ("public/conserved") and specific ("private/variable") determinants distributed among structured and unstructured protein regions, with ligands and receptors recognizing these determinants combinatorially. We employ these principles to engineer a viral chemokine with altered GPCR coupling preferences and provide a web resource to facilitate sequence-structure-function studies and protein design efforts for developing immuno-therapeutics and cell therapies.

Indexed as

ChemokinesReceptors, ChemokineReceptors, G-Protein-CoupledAmino Acid SequenceHumansLigandsModels, MolecularProtein BindingChemokinesLigandsReceptors, ChemokineReceptors, G-Protein-Coupledchemokinechemotaxisdata scienceGPCRmachine learningpolymorphismprotein-protein interactionselectivity determinantsshort linear motifunstructured protein

Identifiers

PMID40273912
PMCPMC12435897

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.