Evidence map›Paper›PMID 40273399›Full record

ArticleG3 (Bethesda, Md.)2025

A global assembly of landrace oat (Avena sativa L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment.

Afrina Rahman, Suraj Sapkota, Oluwatayo Ajayi-Moses, Raja S Nandety, Jason D Fiedler, Sepehr Mohajeri Naraghi, Michael S McMullen, Harold E Bockelman, Kathy Esvelt Klos, Craig H Carlson

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Afrina RahmanDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.ORCID 0000-0003-4363-5076
Suraj SapkotaSmall Grains and Potato Germplasm Research Unit, United States Department of Agriculture - Agricultural Research Service, 1691 S. 2700 W., Aberdeen, ID 83210, USA.
Oluwatayo Ajayi-MosesDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.ORCID 0000-0002-7215-1209
Raja S NandetyDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.ORCID 0000-0002-1129-0790
Jason D FiedlerDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.
Sepehr Mohajeri NaraghiDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.ORCID 0000-0002-0416-8762
Michael S McMullenDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.
Harold E BockelmanSmall Grains and Potato Germplasm Research Unit, United States Department of Agriculture - Agricultural Research Service, 1691 S. 2700 W., Aberdeen, ID 83210, USA.
Kathy Esvelt KlosSmall Grains and Potato Germplasm Research Unit, United States Department of Agriculture - Agricultural Research Service, 1691 S. 2700 W., Aberdeen, ID 83210, USA.ORCID 0000-0002-7129-657X
Craig H CarlsonDepartment of Plant Sciences, North Dakota State University, 1360 Albrecht Blvd. N., Loftsgard Hall 166, Fargo, ND 58102, USA.ORCID 0000-0003-2050-5455

Funding

USDA Agricultural Research Service 2050-21000-038-000-DUSDA Agricultural Research Service 3060-21000-046-000-D
6 · The paper itself

Abstract

Crop adaptation to environmental change will require genetic resources that are different from those currently deployed. The rapid global shift to both warmer temperatures and unpredictable atmospheric events must be considered in developing new breeding populations for local environments. Oats (Avena spp.) are annual grasses that represent a diversity of species and ploidy levels. The most notable, spring oat (Avena sativa L.), is a heart-healthy and gluten-free cereal crop that is grown worldwide as a source of food, feed, and cosmetics products. In the past decade, global oat production has been increasingly challenged by environmental stress and its economic value has suffered due to competition with other high-value grain crops. Although genomic resources are growing for spring oat, there is limited information about the landraces that served as founders to modern varieties. To improve knowledge of adaptive genetic variation and phenotypic diversity of spring oat founders, a set of 758 global A. sativa landrace accessions from the USDA-ARS National Small Grains Collection was investigated, herein dubbed the "Oat Landrace Diversity (OLD) Panel." High-depth genotyping-by-sequencing was conducted to assess genetic diversity, perform genome-wide association mapping for environmental variables, and provide insight into whether quantitative trait loci identified in the OLD Panel have been deployed in modern cultivar populations. Finally, we discuss the importance of leveraging genetic variation attributable to environmental adaptation to reinforce plant breeding programs from ecological instability.

Indexed as

Adaptation, PhysiologicalAvenaGenetic VariationQuantitative Trait, HeritableChromosome MappingGenome, PlantGenotypePhenotypePlant BreedingPolymorphism, Single NucleotideQuantitative Trait Lociadaptationfounder populationfunctional traitsGWASlandraceoatsQTL

Identifiers

PMID40273399
PMCPMC12134994

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.