Evidence map›Paper›PMID 40269707›Full record

ArticleBMC microbiology2025

Comparative genomics and evolutionary insights into zeaxanthin biosynthesis in two novel Flavobacterium species.

Ye Zhuo, Chun-Zhi Jin, Chang-Soo Lee, Kee-Sun Shin, Hyung-Gwan Lee

Abstract readComparative Study
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ye Zhuo *Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
Chun-Zhi Jin *Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
Chang-Soo LeeFungi Research Division, Microbial Research Department, Nakdonggang National Institute of Biological Resources, Sangju, 37242, Republic of Korea.
Kee-Sun ShinMicrobiome Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
Hyung-Gwan LeeCell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea. trustin@kribb.re.kr.

Funding

Korea Ministry of the Environment 2021003420002Ministry of Agriculture, Food and Rural Affairs 321056-5National Research Council of Science and Technology CAP20024-200
6 · The paper itself

Abstract

backgroundDuring the screening of pigment-producing microbes from domestic sources, 102 yellow- or orange-pigmented bacteria were isolated. Among these, two novel Flavobacterium strains, F. sedimentum SUN046

resultsBoth strains utilized the mevalonic acid (MVA) pathway and possessed the crt gene cluster (crtB, crtI, crtY/crtY

conclusionThese findings suggest that both strains represent valuable new resources for zeaxanthin production and provide foundational insights for biotechnological applications involving the genus Flavobacterium, highlighting the genetic and evolutionary complexity of microbial carotenoid biosynthesis.

Indexed as

Evolution, MolecularFlavobacteriumGenomicsZeaxanthinsBacterial ProteinsBiosynthetic PathwaysGenome, BacterialMevalonic AcidMultigene FamilyPhylogenyBacterial ProteinsMevalonic AcidZeaxanthinsCarotenoidsFlavobacteriumLycopene β-cyclaseMevalonic acid (MVA) pathwayTaxonomyZeaxanthin

Identifiers

PMID40269707
PMCPMC12016392

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.