Evidence map›Paper›PMID 40268918›Full record

ArticleNature communications2025

Symmetric adenine methylation is an essential DNA modification in the early-diverging fungus Rhizopus microsporus.

Carlos Lax, Stephen J Mondo, José F Martínez, Anna Muszewska, Leo A Baumgart, José A Pérez-Ruiz, Pablo Carrillo-Marín, Kurt LaButti, Anna Lipzen, Yu Zhang and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. A distinct subclade of AlkB family demethylases in ciliates safeguards the positional fidelity of eukaryotic NProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Future Prospects and Challenges in Mucormycosis Research.Journal of fungi (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Carlos LaxDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID http://orcid.org/0000-0002-2059-303X
Stephen J MondoUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-5797-0647
José F MartínezDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID http://orcid.org/0000-0002-3457-2088
Anna MuszewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.ORCID http://orcid.org/0000-0002-4578-844X
Leo A BaumgartUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
José A Pérez-RuizDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.
Pablo Carrillo-MarínDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.
Kurt LaButtiUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5838-1972
Anna LipzenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-2293-9329
Yu ZhangUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4495-3447
Jie GuoUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Vivian NgUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8941-6931
Eusebio NavarroDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID http://orcid.org/0000-0002-3091-4378
Teresa E PawlowskaSchool of Integrative Plant Science, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-1094-2427
Igor V GrigorievUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3136-8903
Francisco E NicolásDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain. fnicolas@um.es.ORCID http://orcid.org/0000-0003-3762-5971
Victoriano GarreDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain. vgarre@um.es.ORCID http://orcid.org/0000-0001-7605-1726

Funding

Ministry of Economy and Competitiveness | Agencia Estatal de Investigación (Spanish Agencia Estatal de Investigación) PID2021-124674NB-I00Narodowe Centrum Nauki (National Science Centre) #2021/41/B/NZ2/02426Narodowe Centrum Nauki (National Science Centre) 2021/41/B/NZ2/02426
6 · The paper itself

Abstract

The discovery of N6-methyladenine (6mA) in eukaryotic genomes, typically found in prokaryotic DNA, has revolutionized epigenetics. Here, we show that symmetric 6mA is essential in the early diverging fungus Rhizopus microsporus, as the absence of the MT-A70 complex (MTA1c) responsible for this modification results in a lethal phenotype. 6mA is present in 70% of the genes, correlating with the presence of H3K4me3 and H2A.Z in open euchromatic regions. This modification is found predominantly in nucleosome linker regions, influencing the nucleosome positioning around the transcription start sites of highly expressed genes. Controlled downregulation of MTA1c reduces symmetric 6mA sites affecting nucleosome positioning and histone modifications, leading to altered gene expression, which is likely the cause of the severe phenotypic changes observed. Our study highlights the indispensable role of the DNA 6mA in a multicellular organism and delineates the mechanisms through which this epigenetic mark regulates gene expression in a eukaryotic genome.

Indexed as

AdenineDNA, FungalDNA MethylationRhizopusEpigenesis, GeneticFungal ProteinsGene Expression Regulation, FungalHistonesNucleosomesAdenineDNA, FungalFungal Proteinshistone H3 trimethyl Lys4HistonesNucleosomes

Identifiers

PMID40268918
PMCPMC12019607

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.