Evidence map›Paper›PMID 40268874›Full record

ArticleJournal of chemical theory and computation2025

A Thermodynamic Cycle to Predict the Competitive Inhibition Outcomes of an Evolving Enzyme.

Ebru Cetin, Haleh Abdizadeh, Ali Rana Atilgan, Canan Atilgan

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Ebru CetinFaculty of Engineering and Natural Sciences, Sabanci University, 34956 Istanbul, Türkiye.ORCID 0000-0001-7355-8345
Haleh AbdizadehFaculty of Engineering and Natural Sciences, Sabanci University, 34956 Istanbul, Türkiye.
Ali Rana AtilganFaculty of Engineering and Natural Sciences, Sabanci University, 34956 Istanbul, Türkiye.ORCID 0000-0003-0604-6301
Canan AtilganFaculty of Engineering and Natural Sciences, Sabanci University, 34956 Istanbul, Türkiye.ORCID 0000-0003-0557-6044

Funding

Mapping epistatic interactions in molecular evolution of antibiotic resistanceR01GM125748 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Erdal Toprak · 2018 to 2026
$3.6M
NIGMS NIH HHS R01 GM125748
6 · The paper itself

Abstract

Understanding competitive inhibition at the molecular level is essential for unraveling the dynamics of enzyme-inhibitor interactions and predicting the evolutionary outcomes of resistance mutations. In this study, we present a framework linking competitive inhibition to alchemical free energy perturbation (FEP) calculations, focusing on

Indexed as

Escherichia coliFolic Acid AntagonistsTetrahydrofolate DehydrogenaseThermodynamicsTrimethoprimMolecular Dynamics SimulationMutationFolic Acid AntagonistsTetrahydrofolate DehydrogenaseTrimethoprim

Identifiers

PMID40268874
PMCPMC12080111

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.