Evidence map›Paper›PMID 40267081›Full record

ArticlePloS one2025

Colorimetric dual DNAzyme reaction triggered by loop-mediated isothermal amplification for the visual detection of Shiga toxin-producing Escherichia coli in food matrices.

Alaa H Sewid, Joseph H Ramos, Haley C Dylewski, Gillian I Castro, Doris H D'Souza, Shigetoshi Eda

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Strategic Detection ofBiosensors · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alaa H SewidSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America.ORCID 0000-0002-3063-8705
Joseph H RamosSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America.
Haley C DylewskiSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America.
Gillian I CastroDepartment of Chemical and Biomolecular Engineering, The University of Tennessee, Knoxville, Tennessee, United States of America.
Doris H D'SouzaDepartment of Food Science, The University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America.
Shigetoshi EdaSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America.ORCID 0000-0002-9519-1174

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin-producing Escherichia coli (STEC) is causing outbreaks worldwide and a rapid detection method is urgently needed. Loop-mediated isothermal amplification (LAMP) has attracted attention in the development of pathogen detection methods; however, current methods for the detection of LAMP amplicon suffer some drawbacks. In this study, we designed a new LAMP method by incorporating peroxidase-mimicking G-quadruplex DNAzyme for a simple colorimetric detection of the LAMP amplicon. As the new method produces LAMP amplicon containing two DNAzyme molecules per amplification unit, the method was termed colorimetric Dual DNAzyme LAMP (cDDLAMP). cDDLAMP was developed targeting 3 common STEC's virulence genes (stx1, stx2, and eae) that are associated with serious human illnesses such hemorrhagic colitis and hemolytic-uremic syndrome. Immunomagnetic enrichment was used for specific, ultrasensitive, and fast detection of STEC in food samples (leafy vegetables and milk). The sensitivity of cDDLAMP ranged from 1-100 CFU/mL in pure culture to 100-103 CFU/mL in spiked milk, and 104-109 CFU/25g of lettuce. No cross-reaction with other generic E. coli strains and non-E. coli bacteria was observed. The color signal could be observed by the naked eye or analyzed by either UV-Vis spectra or smartphone platforms. Therefore, the cDDLAMP assay is a cost-effective method for detecting STEC strains without expensive machines or extraction methods.

Indexed as

ColorimetryDNA, CatalyticFood MicrobiologyNucleic Acid Amplification TechniquesShiga-Toxigenic Escherichia coliAnimalsHumansMilkMolecular Diagnostic TechniquesDNA, Catalytic

Identifiers

PMID40267081
PMCPMC12017578

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.