Evidence map›Paper›PMID 40265816›Full record

ArticlePlants (Basel, Switzerland)2025

Transcriptome Analysis Reveals the Pivotal Genes and Regulation Pathways Under Cold Stress and Identifies

Qijin Lou, Peifeng Wang, Miao Yu, Zhigan Xie, Chen Xu, Shengyu Chen, Hao Yu, Rui Zhang, Guangling Tian, Di Hao and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Transcriptome Analysis IdentifiesPlants (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Qijin LouDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Peifeng WangDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Miao YuInstitute of Crop Germplasm Resources, Jilin Academy of Agricultural Sciences, Gongzhuling 136100, China.
Zhigan XieRice Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Rice Genetics and Breeding/State Key Laboratory for Conservation and Utillzation of Subtropical Agro-Bioresources, Nanning 530007, China.
Chen XuDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Shengyu ChenDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Hao YuDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Rui ZhangDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Guangling TianDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Di HaoDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Xianshi KeDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Shuai YuDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Jiajia ZhouDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Yao ZhaoDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Chao YeDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Jiyuan GuoDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Haiyan ZhangDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Mo ChenDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.
Xingbei LiuDepartment of Resources and Environment, Moutai Institute, Renhuai 564502, China.

Funding

Academic Star Cultivation, Free Exploration and Innovation at Moutai Institute myxm202305High-level Talent Research Start-up Fund Project at Maotai Institute mygccrc[2022]048High-level Talent Research Start-up Fund Project at Maotai Institute mygccrc[2022]068High-level Talent Research Start-up Fund Project at Maotai Institute mygccrc[2023]047Natural Science Foundation of Guizhou in China ZK [2022] 536Science and Technology Cooperation Project of Zunyi HZ (2024) 382
6 · The paper itself

Abstract

Low temperature at the seedling stage adversely affects sorghum growth and development and limits its geographical distribution. APETALA2/Ethylene-Responsive transcription factors (AP2/ERFs), one of the largest transcription factor families in plants, play essential roles in growth, development, and responses to abiotic stresses. However, the roles of AP2/ERF genes in cold tolerance in sorghum and the mechanisms underlying their effects remain largely unknown. Here, transcriptome sequencing (RNA-seq) was performed on the leaves of sorghum seedlings before and after cold treatment. Several candidate genes for cold tolerance and regulation pathways involved in "photosynthesis" under cold stress were identified via Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment. Additionally, the AP2/ERF family gene

Indexed as

AP2/ERFcold toleranceRNA-seqseedlingssorghum

Identifiers

PMID40265816
PMCPMC11944419

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.