Evidence map›Paper›PMID 40260085›Full record

ArticleFrontiers in microbiology2025

Emergence, persistence, and positive selection of yellow fever virus in Colombia.

Lester J Perez, Laura S Perez-Restrepo, Karl Ciuoderis, Jaime Usuga, Isabel Moreno, Vanessa Vargas, Angela J Arévalo-Arbelaez, Michael G Berg, Gavin A Cloherty, Juan Pablo Hernández-Ortiz and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lester J Perez *Infectious Diseases Research, Abbott Diagnostics, Chicago, IL, United States.
Laura S Perez-Restrepo *Abbott Pandemic Defense Coalition, Chicago, IL, United States.
Karl CiuoderisAbbott Pandemic Defense Coalition, Chicago, IL, United States.
Jaime UsugaAbbott Pandemic Defense Coalition, Chicago, IL, United States.
Isabel MorenoAbbott Pandemic Defense Coalition, Chicago, IL, United States.
Vanessa VargasAbbott Pandemic Defense Coalition, Chicago, IL, United States.
Angela J Arévalo-ArbelaezAbbott Pandemic Defense Coalition, Chicago, IL, United States.
Michael G BergInfectious Diseases Research, Abbott Diagnostics, Chicago, IL, United States.
Gavin A ClohertyInfectious Diseases Research, Abbott Diagnostics, Chicago, IL, United States.
Juan Pablo Hernández-OrtizGHI One Health Colombia, Universidad Nacional de Colombia, Medellín, Colombia.
Jorge E OsorioAbbott Pandemic Defense Coalition, Chicago, IL, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yellow fever virus (YFV) is an arbovirus that causes acute febrile illness (AFI), in tropical areas of South America and Africa. Through a 2020-2023 AFI study in Leticia, Colombia, leveraging metagenomic next-generation sequencing (mNGS), we identified and isolated YFV (LET1450). Phylogenetic analysis showed this strain belongs to South American genotype II (SamII), linked to Peruvian and Bolivian sequences emerging around 1989. Phylodynamic analysis indicates these strains, with a unique genetic makeup, could have reduced vaccine susceptibility, and due to positive Darwinian selection have an enhanced adaptive capacity. Antigenic analysis identified additional immune-evasive traits and this strain's potential for wider Latin American spread. Phylogeographic reconstruction demonstrated the persistence of YFV in Colombia is not due to repeated external introductions, but results from continuous, cryptic internal circulation. This study highlights the crucial role of mNGS in monitoring emerging strains and underscores the need for genomic surveillance of YFV and other arboviral infections.

Indexed as

acute febrile illnessdeimmunizationphylodynamicpositive selectionwhole genome sequencingyellow fever virus

Identifiers

PMID40260085
PMCPMC12009951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.