Evidence map›Paper›PMID 40258965›Full record

ArticleScientific reports2025

Differential changes in the microglial transcriptome between neonatal and adult mice after spinal cord injury.

Qi Jiang, Shiyuan Xue, Xiaojing Pan, Tengbo Yu, Xinyi Wei, Liping Li, Chao Qi, Weipeng Shi, Zhongkai Ren, Die Hu and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Transcriptomics Insights into Spinal Cord Injury for Therapy Development.International journal of molecular sciences · 2026
    Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Qi Jiang *Department of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.
Shiyuan Xue *Department of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.
Xiaojing PanEye Institute of Shandong First Medical University, Qingdao Eye Hospital of Shandong First Medical University, Qingdao, 266071, China.
Tengbo YuDepartment of Orthopedic Surgery, Qingdao Hospital, University of Health and Rehabilitation Sciences (Qingdao Municipal Hospital), Qingdao, 266071, China.
Xinyi WeiDepartment of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.
Liping LiDepartment of Bone Surgery, Qingdao Central Hospital, Qingdao, 266000, China.
Chao QiDepartment of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.
Weipeng ShiDepartment of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.
Zhongkai RenDepartment of Orthopedic Surgery, Qingdao Hospital, University of Health and Rehabilitation Sciences (Qingdao Municipal Hospital), Qingdao, 266071, China.
Die HuEye Institute of Shandong First Medical University, Qingdao Eye Hospital of Shandong First Medical University, Qingdao, 266071, China. hudiewahaha@126.com.
Haitao FuDepartment of Sports Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China. fuhaitao@qdu.edu.cn.

Funding

the China Postdoctoral Science Foundation 2021M691690the National Natural Science Foundation of China 82102558the Shandong Province Natural Science Foundation ZR2020QH117the Shandong Provincial Medical and Health Science and Technology Project 202407020962
6 · The paper itself

Abstract

Spinal cord injury (SCI) remains a significant therapeutic challenge, lacking effective treatment options. Related studies have found that neonatal microglia are more effective than adult microglia in promoting the recovery of SCI, but the reason why neonatal, not adult, microglia are more conducive to SCI recovery is not clear, the differences of gene expression and pathways between them are still worth exploring. Therefore, we examined changes in the microglial transcriptome after SCI in neonatal and adult mice. We identified hub genes or pathways that exhibited significant differential expression between the two groups. Four Gene sets were established for further analysis, named Gene set 1, Gene set 2, Gene set 3, Gene set 4, respectively. GO analysis revealed enrichment in categories critical for injury repair, including DNA metabolism, replication, recombination, meiotic cell cycle progression, regulation of cell-cell adhesion, megakaryocyte and endothelial development, modulation of the neuroinflammatory response, endocytosis, and regulation of cytokine production and cell migration. KEGG analysis revealed enrichment in pathways critical for various cellular processes, including the p53, TNF, PI3K-AKT, PPAR and B cell receptor signaling pathway, axon guidance, cytokine-cytokine receptor interaction. PPI and TF-hub gene-microRNA networks were constructed to elucidate the underlying gene regulatory mechanisms. Additionally, drug prediction was performed to identify potential therapeutic candidates. Finally, 11 hub genes (Chek1, RRM2, Lyve1, Mboat1, Clec4a3, Ccnd1, Cdk6, Zeb1, Igf1, Pparg, and Cd163) were selected from four Gene sets for further validation using qRT-PCR. We identified candidate genes and pathways involved in microglial transcriptome heterogeneity after SCI in neonatal and adult mice. These findings provide valuable insights into potential therapeutic targets for neonatal microglia in the treatment of SCI.

Indexed as

MicrogliaSpinal Cord InjuriesTranscriptomeAnimalsAnimals, NewbornDisease Models, AnimalGene Expression ProfilingGene Regulatory NetworksMiceBioinformaticsMicrogliaQuantitative real-time polymerase chain reaction.Spinal cord injuryTranscriptome sequencing

Identifiers

PMID40258965
PMCPMC12012053

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.