Evidence map›Paper›PMID 40258228›Full record

ArticlePLoS computational biology2025

A new paradigm considering multicellular adhesion, repulsion and attraction represent diverse cellular tile patterns.

José A Carrillo, Hideki Murakawa, Makoto Sato, Miaoxing Wang

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

José A CarrilloMathematical Institute, University of Oxford, Oxford, United Kingdom.ORCID 0000-0001-8819-4660
Hideki MurakawaFaculty of Advanced Science and Technology, Ryukoku University, Otsu, Shiga, Japan.ORCID 0000-0002-0309-4394
Makoto SatoMathematical Neuroscience Unit, Institute for Frontier Science Initiative, Laboratory of Developmental Neurobiology, Graduate School of Medical Sciences, Kanazawa University, Kanazawa, Ishikawa, Japan.
Miaoxing WangMathematical Neuroscience Unit, Institute for Frontier Science Initiative, Laboratory of Developmental Neurobiology, Graduate School of Medical Sciences, Kanazawa University, Kanazawa, Ishikawa, Japan.

Funding

European Research Council Executive Agency (ERC)JSPS KAKENHI
6 · The paper itself

Abstract

Cell sorting by differential adhesion is one of the basic mechanisms explaining spatial organization of neurons in early stage brain development of fruit flies. The columnar arrangements of neurons determine the large-scale patterns in the fly visual center. Experimental studies indicate that hexagonal configurations regularly appear in the fly compound eye, which is connected to the visual center by photoreceptor axons, while tetragonal configurations can be induced in mutants. We need a mathematical framework to study the mechanisms of such a transition between hexagonal and tetragonal arrangements. Here, we propose a new mathematical model based on macroscopic approximations of agent-based models that produces a similar behavior changing from hexagonal to tetragonal steady configurations when medium-range repulsion and longer-range attraction between individuals are incorporated in previous successful models for cell sorting based on adhesion and volume constraints. We analyze the angular configurations of these patterns based on angle summary statistics and compare between experimental data and parameter fitted ARA (Adhesion-Repulsion-Attraction) models showing that intermediate patterns between hexagonal and tetragonal configuration are common in experimental data as well as in our ARA mathematical model. Our studies indicate an overall qualitative agreement of ARA models in tile patterning and pave the way for their quantitative studies. Our study opens up a new avenue to explore tile pattern transitions, found not only in the column arrangement in the brain, but also in the other related biological processes.

Indexed as

Cell AdhesionModels, BiologicalModels, NeurologicalAnimalsComputational BiologyComputer SimulationDrosophilaDrosophila melanogasterNeurons

Identifiers

PMID40258228
PMCPMC12061426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.