Evidence map›Paper›PMID 40258063›Full record

ArticlePloS one2025

A method for site-specifically tethering the enzyme urease to DNA origami with sustained activity.

Ian Murphy, Keren Bobilev, Daichi Hayakawa, Eden Ikonen, Thomas E Videbæk, Shibani Dalal, Wylie W Ahmed, Jennifer L Ross, W Benjamin Rogers

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Programmable Nanoscale Motion via Molecular Patterning on DNA Origami.Angewandte Chemie (International ed. in English) · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ian MurphyMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.ORCID 0009-0001-8306-4004
Keren BobilevMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.
Daichi HayakawaMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.ORCID 0000-0002-2783-5943
Eden IkonenMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.
Thomas E VidebækMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.ORCID 0000-0001-9158-2824
Shibani DalalMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.
Wylie W AhmedLaboratoire de Physique Théorique (LPT), Université de Toulouse, CNRS, UPS, Toulouse, France.ORCID 0000-0001-5243-5864
Jennifer L RossDepartment of Physics, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0002-4838-3798
W Benjamin RogersMartin A. Fisher School of Physics, Brandeis University, Waltham, Massachusetts, United States of America.ORCID 0000-0001-8587-8215

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Attaching enzymes to nanostructures has proven useful to the study of enzyme functionality under controlled conditions and has led to new technologies. Often, the utility and interest of enzyme-tethered nanostructures lie in how the enzymatic activity is affected by how the enzymes are arranged in space. Therefore, being able to conjugate enzymes to nanostructures while preserving the enzymatic activity is essential. In this paper, we present a method to conjugate single-stranded DNA to the enzyme urease while maintaining enzymatic activity. We show evidence of successful conjugation and quantify the variables that affect the conjugation yield. We also show that the enzymatic activity is unchanged after conjugation compared to the enzyme in its native state. Finally, we demonstrate the tethering of urease to nanostructures made using DNA origami with high site-specificity. Decorating nanostructures with enzymatically-active urease may prove to be useful in studying, or even utilizing, the functionality of urease in disciplines ranging from biotechnology to soft-matter physics. The techniques we present in this paper will enable researchers across these fields to modify enzymes without disrupting their functionality, thus allowing for more insightful studies into their behavior and utility.

Indexed as

DNADNA, Single-StrandedEnzymes, ImmobilizedNanostructuresUreaseDNADNA, Single-StrandedEnzymes, ImmobilizedUrease

Identifiers

PMID40258063
PMCPMC12011258

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.