Evidence map›Paper›PMID 40258041›Full record

ArticlePLoS computational biology2025

An expandable synthetic library of human paired antibody sequences.

Toma M Marinov, Perry T Wasdin, Gwen Jordaan, Alexis K Janke, Alexandra A Abu-Shmais, Ivelin S Georgiev

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Toma M MarinovVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0009-0000-7029-2641
Perry T WasdinVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Gwen JordaanVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Alexis K JankeVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Alexandra A Abu-ShmaisVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Ivelin S GeorgievVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0002-6312-7696

Funding

High-throughput mapping of antigen specificity to B-cell-receptor sequence for characterizing antibody responses in HIV-vaccinated and infected individualsR01AI152693 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GEORGIEV, IVELIN · 2020 to 2023
$3.4M
Technologies for High-Throughput Mapping of Antigen Specificity to B-Cell-Receptor SequenceR01AI175245 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ivelin Georgiev · 2023 to 2026
$3.4M
NIAID NIH HHS R01 AI152693NIAID NIH HHS R01 AI175245
6 · The paper itself

Abstract

The potential diversity in the global repertoire of human antibody sequences is currently not well understood due to the limited existing paired antibody heavy-light chain sequence data that has been hindered by the low throughput and high costs of current single-cell sequencing methods. Here, we report IgHuAb, a large language model for high-throughput generation of paired human antibody sequences. Using IgHuAb, we created SynAbLib, a synthetic human antibody library that mimics population-level features of naturally occurring human antibody sequences, yet is associated with significantly greater diversity in sequence space. Further, experimental validation of a diverse set of antibodies from SynAbLib showed robust expression yields. IgHuAb and SynAbLib provide a readily expandable platform for human monoclonal antibody generation that can be efficiently mined for antibody sequences with target properties.

Indexed as

Peptide LibraryAntibodies, MonoclonalComputational BiologyGene LibraryHigh-Throughput Nucleotide SequencingHumansImmunoglobulin Heavy ChainsAntibodies, MonoclonalImmunoglobulin Heavy ChainsPeptide Library

Identifiers

PMID40258041
PMCPMC12011268

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.