Evidence map›Paper›PMID 40253470›Full record

ArticleCommunications biology2025

Stability convergence in natural antibodies with ultra-long hypervariable loops.

Marcel Passon, Matja Zalar, Thomas Nehls, Stefaan De Smedt, Frederik Lermyte, Ahmad Reza Mehdipour, Hristo L Svilenov

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marcel PassonFaculty of Pharmaceutical Sciences, Ghent University, Ottergemsesteenweg 460, 9000, Ghent, Belgium.ORCID http://orcid.org/0000-0002-9776-4992
Matja ZalarFaculty of Chemistry and Chemical Engineering, University of Maribor, Maribor, Slovenia.ORCID http://orcid.org/0000-0002-4807-0177
Thomas NehlsClemens-Schöpf Institute of Organic Chemistry and Biochemistry, Department of Chemistry, Technical University of Darmstadt, Darmstadt, Germany.
Stefaan De SmedtFaculty of Pharmaceutical Sciences, Ghent University, Ottergemsesteenweg 460, 9000, Ghent, Belgium.ORCID http://orcid.org/0000-0002-8653-2598
Frederik LermyteClemens-Schöpf Institute of Organic Chemistry and Biochemistry, Department of Chemistry, Technical University of Darmstadt, Darmstadt, Germany.ORCID http://orcid.org/0000-0001-7371-4475
Ahmad Reza MehdipourCenter for Molecular Modeling, Ghent University, Ghent, Belgium.
Hristo L SvilenovFaculty of Pharmaceutical Sciences, Ghent University, Ottergemsesteenweg 460, 9000, Ghent, Belgium. hristo.svilenov@tum.de.ORCID http://orcid.org/0000-0001-5863-9569

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 461372424
6 · The paper itself

Abstract

Antibodies bind to antigens with hypervariable loops called complementarity-determining regions (CDRs). In contrast to conventional antibodies, a subset of bovine antibodies has an ultra-long CDR (ulCDR) composed of up to 70 residues folded as a stalk and knob. The fundamental principles of how these antibodies maintain their structure and stability remain enigmatic. Here, we investigated how different natural ulCDRs affect antibody structure, stability and function. To this end, we swapped diverse ulCDRs onto the same antibody scaffold. All ulCDR-swap variants exhibit nearly identical secondary structure fingerprints and remarkably similar thermal stability. In addition, specificity and high-affinity binding to the antigens are maintained. Hydrogen-deuterium exchange and molecular dynamics simulations suggest small differences between the variants arising from changed interactions between different stalks and the underlying scaffold. Overall, we reveal principles of grafting natural ulCDRs onto a common Fab scaffold, which have implications for antibody design for biomedical applications.

Indexed as

AntibodiesComplementarity Determining RegionsAnimalsCattleMolecular Dynamics SimulationProtein StabilityAntibodiesComplementarity Determining Regions

Identifiers

PMID40253470
PMCPMC12009342

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.