Evidence map›Paper›PMID 40253449›Full record

ArticleNature communications2025

Exploring and expanding the natural chemical space of bacterial diterpenes.

Xiuting Wei, Wenbo Ning, Caitlin A McCadden, Tyler A Alsup, Zining Li, Diana P Łomowska-Keehner, Jordan Nafie, Tracy Qu, Melvin Osei Opoku, Glen R Gillia and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
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  11. Article
  12. Review
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  14. Article
  15. Article
  16. The initial dynamics of product release in terpene synthases-The case of CotB2.Protein science : a publication of the Protein Society · 2025
    Article
  17. Biosynthesis of the Red Algal Diterpene Peyssonnosol in Bacteria.Angewandte Chemie (International ed. in English) · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xiuting Wei *Department of Chemistry, University of Florida, Gainesville, FL, USA.
Wenbo Ning *Department of Chemistry, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-6207-8538
Caitlin A McCaddenDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Tyler A AlsupDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Zining LiDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-6921-8417
Diana P Łomowska-KeehnerDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Jordan NafieBiotools, Inc., Jupiter, FL, USA.ORCID http://orcid.org/0000-0003-1986-0302
Tracy QuDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0009-0007-0272-4976
Melvin Osei OpokuDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Glen R GilliaDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Baofu XuDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-0144-2455
Daniel G IcenhourDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Jeffrey D RudolfDepartment of Chemistry, University of Florida, Gainesville, FL, USA. jrudolf@chem.ufl.edu.ORCID http://orcid.org/0000-0003-2718-9651

Funding

Discovery and Biosynthesis of Bacterial TerpenoidsR35GM142574 · NIGMS · UNIVERSITY OF FLORIDA · PI Jeffrey Daniel Rudolf · 2021 to 2026
$2.4M
Chemistry-Biology Interface Training Program at the University of FloridaT32GM136583 · NIGMS · UNIVERSITY OF FLORIDA · PI Chenglong Li · 2020 to 2026
$1.1M
NMR console upgrade for structural biology and metabolomicsS10OD028753 · OD · UNIVERSITY OF FLORIDA · PI LONG, JOANNA R · 2020 to 2020
$600k
Acquisition of a Q Exactive HF Hybrid Quadrupole-OrbitrapS10OD021758 · OD · UNIVERSITY OF FLORIDA · PI BASSO, KARI B · 2017 to 2017
$600k
National Science Foundation (NSF) DGE-2236414NIGMS NIH HHS R35 GM142574NIGMS NIH HHS T32 GM136583NIH HHS S10 OD021758NIH HHS S10 OD028753U.S. Department of Health & Human Services | National Institutes of Health (NIH) S10 OD021758-01A1
6 · The paper itself

Abstract

Terpenoids are the largest family of natural products but relatively rare in bacteria. Genome mining reveals widespread prevalence of terpene synthases, the enzymes responsible for constructing the hydrocarbon skeletons, in bacteria. Here, we show that 125 (37%) of 334 terpene synthases from 8 phyla, 17 classes, and 83 genera of bacteria are active as diterpene synthases. Isolation and structural elucidation of 28 diterpenes from 31 terpene synthases reveal three previously unreported terpene skeletons, skeletons of natural products from other organisms with unknown biosynthetic pathways, diterpenes that are known in other organisms but to the best of our knowledge not previously seen in bacteria, or new structural and stereochemical isomers of diterpenes. We also identify type I diterpene synthases from myxobacteria and cyanobacteria. This study will help to discover new natural products, advance studies in terpenoid biosynthesis and enzymology, and provide model systems to probe the ecological roles of terpenes.

Indexed as

Alkyl and Aryl TransferasesBacteriaBiological ProductsDiterpenesBacterial ProteinsBiosynthetic PathwaysCyanobacteriaPhylogenyAlkyl and Aryl TransferasesBacterial ProteinsBiological ProductsDiterpenesterpene synthase

Identifiers

PMID40253449
PMCPMC12009305

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.