Evidence map›Paper›PMID 40253368›Full record

ArticleNature communications2025

Structural basis for Polθ-helicase DNA binding and microhomology-mediated end-joining.

Fumiaki Ito, Ziyuan Li, Leonid Minakhin, Htet A Khant, Richard T Pomerantz, Xiaojiang S Chen

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Science advances · 2026
    Article
  5. Beyond Short Microhomologies: Mismatch-Compatible Pol θ-Mediated DNA Damage Repair.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  6. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  7. Review
  8. Coordinated transfer of DNA between Pol θ and Pol δ resets microhomology choice during double-strand break repair.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Making 3' ends meet.Nature structural & molecular biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Fumiaki Ito *Molecular and Computational Biology, Department of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA, 90089, USA.ORCID http://orcid.org/0000-0002-2274-118X
Ziyuan Li *Molecular and Computational Biology, Department of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA, 90089, USA.
Leonid MinakhinDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, 19107, USA.
Htet A KhantUSC Center of Excellence for Nano-Imaging, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, 90089, USA.
Richard T PomerantzDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, 19107, USA. richard.pomerantz@jefferson.edu.ORCID http://orcid.org/0000-0003-1194-9871
Xiaojiang S ChenMolecular and Computational Biology, Department of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA, 90089, USA. xiaojiac@usc.edu.ORCID http://orcid.org/0000-0001-9574-0551

Funding

Structural Basis of APOBEC Functions and Interactions with HIV-VifR01AI150524 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI XIAOJIANG S CHEN · 2019 to 2026
$3.8M
Novel Mechanisms and Regulation of Mammalian Double-Strand Break RepairR35GM152198 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI Richard T Pomerantz · 2024 to 2026
$2.1M
NIAID NIH HHS R01 AI150524NIGMS NIH HHS R35 GM152198U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI150524U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM152198
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) present a critical threat to genomic integrity, often precipitating genomic instability and oncogenesis. Repair of DSBs predominantly occurs through homologous recombination (HR) and non-homologous end joining (NHEJ). In HR-deficient cells, DNA polymerase theta (Polθ) becomes critical for DSB repair via microhomology-mediated end joining (MMEJ), also termed theta-mediated end joining (TMEJ). Thus, Polθ is synthetically lethal with BRCA1/2 and other HR factors, underscoring its potential as a therapeutic target in HR-deficient cancers. However, the molecular mechanisms governing Polθ-mediated MMEJ remain poorly understood. Here we present a series of cryo-electron microscopy structures of the Polθ helicase domain (Polθ-hel) in complex with DNA containing different 3'-ssDNA overhangs. The structures reveal the sequential conformations adopted by Polθ-hel during the critical phases of DNA binding, microhomology searching, and microhomology annealing. The stepwise conformational changes within the Polθ-hel subdomains and its functional dimeric state are pivotal for aligning the 3'-ssDNA overhangs, facilitating the microhomology search and subsequent annealing necessary for DSB repair via MMEJ. Our findings illustrate the essential molecular switches within Polθ-hel that orchestrate the MMEJ process in DSB repair, laying the groundwork for the development of targeted therapies against the Polθ-hel.

Indexed as

DNA-Directed DNA PolymeraseDNA End-Joining RepairDNA HelicasesCryoelectron MicroscopyDNADNA Breaks, Double-StrandedDNA Polymerase thetaDNA, Single-StrandedHumansModels, MolecularProtein BindingProtein DomainsDNADNA-Directed DNA PolymeraseDNA HelicasesDNA Polymerase thetaDNA, Single-Stranded

Identifiers

PMID40253368
PMCPMC12009414

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.