Evidence map›Paper›PMID 40252093›Full record

ArticleCurrent microbiology2025

Characterization and Genomic Analysis of a Lytic Vibriophage vB_VneS_S3 of Infecting Vibrio neocaledonicus.

Qiyue Yang, Shujuan Sun, Hongbing Shao, Yue Su, Ni Wang, Xin Chen, Meiaoxue Han, Jinhao Shen, Yeong Yik Sung, Wen Jye Mok and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Qiyue Yang *MoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Shujuan Sun *MoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Hongbing Shao *MoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Yue SuMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Ni WangMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Xin ChenMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Meiaoxue HanMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Jinhao ShenMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Yeong Yik SungUMT-OUC Joint Centre for Marine Studies, Qingdao, China.
Wen Jye MokUMT-OUC Joint Centre for Marine Studies, Qingdao, China.
Li Lian WongUMT-OUC Joint Centre for Marine Studies, Qingdao, China.
Andrew McMinnMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.
Min WangMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China. mingwang@ouc.edu.cn.
Yantao LiangMoE Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China. liangyantao@ouc.edu.cn.

Funding

the National Key Research and Development Program of China 2022YFC2807500the National Natural Science Foundation of China 42176111the National Natural Science Foundation of China 42306156the National Natural Science Foundation of China Nos. 42120104006the Ocean Negative Carbon Emissions, and the Fundamental Research Funds for the Central Universities 201812002the Ocean Negative Carbon Emissions, and the Fundamental Research Funds for the Central Universities 202172002
6 · The paper itself

Abstract

Vibrio is a prevalent marine bacteria, distinguished by their remarkable genomic flexibility. Although Vibrio neocaledonicus is well known for effectively inhibiting carbon steel corrosion, nothing is known about its viruses. This study identified a new lytic vibriophage vB_VneS_S3. Transmission electron microscopy analysis showed that vB_VneS_S3 is a siphoviral morphology with an icosahedral head and long non-contractile tail. It is a linear, dsDNA with a length of 76,083 bp and a G + C content of 48.97%, encodes 101 ORFs. Average nucleotide sequence identification and phylogenetic analysis demonstrated that phage vB_VneS_S3 is a new species within the genus of Mardecavirus. Biogeographic analysis revealed that vB_VneS_S3 was exclusively identified in the Arctic, where it exhibited low abundance. In conclusion, our results provided basic information about the interaction between V. neocaledonicus and viruses, increased our knowledge of phylogenetic diversity, genomic characteristics, and distribution of the novel phage.

Indexed as

BacteriophagesGenome, ViralSiphoviridaeVibrioBase CompositionDNA, ViralGenomicsOpen Reading FramesPhylogenyDNA, Viral

Identifiers

PMID40252093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.