Evidence map›Paper›PMID 40251157›Full record

ArticleNPJ breast cancer2025

MammOnc-DB, an integrative breast cancer data analysis platform for target discovery.

Santhosh Kumar Karthikeyan, Darshan S Chandrashekar, Snigdha Sahai, Sadeep Shrestha, Ritu Aneja, Rajesh Singh, Celina G Kleer, Sidharth Kumar, Zhaohui S Qin, Harikrishna Nakshatri and 3 more

Abstract read
In one paragraph

Article in NPJ breast cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  10. Expression and Clinical Significance ofInternational journal of molecular sciences · 2025
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  11. Review
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  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Santhosh Kumar Karthikeyan *Department of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Darshan S Chandrashekar *Department of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Snigdha SahaiDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Sadeep ShresthaEpidemiology, University of Alabama at Birmingham School of Public Health, Birmingham, AL, USA.
Ritu AnejaSchool of Health Professions, University of Alabama at Birmingham School of Public Health, Birmingham, AL, USA.
Rajesh SinghDepartment of Microbiology, Biochemistry and Immunology, Morehouse School of Medicine, Atlanta, GA, USA.
Celina G KleerDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, USA.
Sidharth KumarDepartment of Computer Science, University of Illinois Chicago, Chicago, IL, USA.
Zhaohui S QinDepartment of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-1583-146X
Harikrishna NakshatriDepartment of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID http://orcid.org/0000-0001-8876-0052
Upender ManneDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Chad J CreightonDepartment of Medicine and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-6090-703X
Sooryanarayana VaramballyDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA. svarambally@uabmc.edu.

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
TRAINING AND CAREER DEVELOPMENTU54CA118948 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI UPENDER MANNE, Erica Michelle Stringer-Reasor · 2005 to 2026
$26.6M
BLRD VA I01 BX007249BLRD VA IK6 BX005244NCI NIH HHS P30 CA125123NCI NIH HHS U54 CA118948
6 · The paper itself

Abstract

Breast cancer (BCa), a leading malignancy among women, is characterized by morphological and molecular heterogeneity. While early-stage, hormone receptor, and HER2-positive BCa are treatable, triple-negative BCa and metastatic BCa remains largely untreatable. Advances in sequencing and proteomic technologies have improved our understanding of the molecular alterations that occur during BCa initiation and progression and enabled identification of subclass-specific biomarkers and therapeutic targets. Despite the availability of abundant omics data in public repositories, user-friendly tools for multi-omics data analysis and integration are scarce. To address this, we developed a comprehensive BCa data analysis platform called MammOnc-DB ( http://resource.path.uab.edu/MammOnc-Home.html ), comprising data from more than 20,000 BCa samples. MammOnc-DB facilitates hypothesis generation and testing, biomarker discovery, and therapeutic targets identification. The platform also includes pre- and post-treatment data, which can help users identify treatment resistance markers and support combination therapy strategies, offering researchers and clinicians a comprehensive tool for BCa data analysis and visualization.

Identifiers

PMID40251157
PMCPMC12008238

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.