Evidence map›Paper›PMID 40251011›Full record

ArticleFEMS microbiology ecology2025

Weberviruses are gut-associated phages that infect Klebsiella spp.

Samuel J T Dawson, Preetha Shibu, Sara Garnett, Fiona Newberry, Thomas C Brook, Tobi Tijani, Magdalena Kujawska, Lindsay J Hall, Anne L McCartney, David Negus and 1 more

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Samuel J T DawsonDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.
Preetha ShibuLife Sciences, University of Westminster, London, W1W 6UW, United Kingdom.
Sara GarnettDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.
Fiona NewberryDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.
Thomas C BrookLife Sciences, University of Westminster, London, W1W 6UW, United Kingdom.
Tobi TijaniLife Sciences, University of Westminster, London, W1W 6UW, United Kingdom.
Magdalena KujawskaIntestinal Microbiome, ZIEL-Institute for Food & Health, Technical University of Munich, Freising 85354, Germany.
Lindsay J HallIntestinal Microbiome, ZIEL-Institute for Food & Health, Technical University of Munich, Freising 85354, Germany.
Anne L McCartneyDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.
David NegusDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.
Lesley HoylesDepartment of Biosciences, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.ORCID 0000-0002-6418-342X

Funding

IBMSImperial Health CharityMedical Research Council MR/L01632X/1Nottingham Trent UniversityWellcome TrustWellcome Trust 220876/Z/20/Z
6 · The paper itself

Abstract

Weberviruses are bacteriophages (phages) that can infect and lyse clinically relevant, multidrug-resistant (MDR) strains of Klebsiella. They are an attractive therapeutic option to tackle Klebsiella infections due to their high burst sizes, long shelf life, and associated depolymerases. In this study, we isolated and characterized seven new lytic phages and compared their genomes with those of their closest relatives. Gene-sharing network, ViPTree proteome, and terL gene-sequence-based analyses incorporating all publicly available webervirus genomes [n = 258 from isolates, n = 65 from metagenome-assembled genome (MAG) datasets] confirmed the seven phages as members of the genus Webervirus and identified a novel genus (Defiantjazzvirus) within the family Drexlerviridae. Using our curated database of 265 isolated phage genomes and 65 MAGs (n = 330 total), we found that weberviruses are distributed globally and primarily associated with samples originating from the gut: sewage (154/330, 47%), wastewater (83/330, 25%), and human faeces (66/330, 20%). We identified three distinct clusters of potential depolymerases encoded within the 330 genomes. Due to their global distribution, frequency of isolation and lytic activity against the MDR clinical Klebsiella strains used in this study, we conclude that weberviruses and their depolymerases show promise for development as therapeutic agents against Klebsiella spp.

Indexed as

BacteriophagesKlebsiellaFecesGenome, ViralHumansPhylogenySewageWastewaterSewageWastewatercomparative genomicsenvironmentKlebsiella pneumoniaemetagenome-assembled genomesmicrobiota

Identifiers

PMID40251011
PMCPMC12023860

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.