Evidence map›Paper›PMID 40248248›Full record

ArticleChemical science2025

PepINVENT: generative peptide design beyond natural amino acids.

Gökçe Geylan, Jon Paul Janet, Alessandro Tibo, Jiazhen He, Atanas Patronov, Mikhail Kabeshov, Werngard Czechtizky, Florian David, Ola Engkvist, Leonardo De Maria

Abstract read
In one paragraph

Article in Chemical science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
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  7. Article
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  9. Review
  10. Peptide-based drug design using generative AI.Chemical communications (Cambridge, England) · 2026
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Journal of chemical theory and computation · 2025
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gökçe GeylanMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.ORCID https://orcid.org/0000-0001-5961-4953
Jon Paul JanetMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.ORCID https://orcid.org/0000-0001-7825-4797
Alessandro TiboMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.
Jiazhen HeMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.
Atanas PatronovQuantitative Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden.
Mikhail KabeshovMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.
Werngard CzechtizkyMedicinal Chemistry, Research and Early Development, Respiratory & Immunology, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden.
Florian DavidDivision of Systems and Synthetic Biology, Department of Life Sciences, Chalmers University of Technology Gothenburg Sweden.
Ola EngkvistMolecular AI, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden gokcegeylan96@gmail.com.ORCID https://orcid.org/0000-0003-4970-6461
Leonardo De MariaMedicinal Chemistry, Research and Early Development, Respiratory & Immunology, BioPharmaceuticals R&D, AstraZeneca Gothenburg Sweden.ORCID https://orcid.org/0000-0002-8061-4242

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peptides play a crucial role in drug design and discovery whether as a therapeutic modality or a delivery agent. Non-natural amino acids (NNAAs) have been used to enhance the peptide properties such as binding affinity, plasma stability and permeability. Incorporating novel NNAAs facilitates the design of more effective peptides with improved properties. The generative models used in the field have focused on navigating the peptide sequence space. The sequence space is formed by combinations of a predefined set of amino acids. However, there is still a need for a tool to explore the peptide landscape beyond this enumerated space to unlock and effectively incorporate the

Identifiers

PMID40248248
PMCPMC12002334

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.