Evidence map›Paper›PMID 40244695›Full record

ArticleJournal of medicinal chemistry2025

Structure-Guided Design of ISOX-DUAL-Based Degraders Targeting BRD4 and CBP/EP300: A Case of Degrader Collapse.

Anthony K Edmonds, Dimitrios-Ilias Balourdas, Graham P Marsh, Robert Felix, Bradley Brasher, Jeff Cooper, Cari Graber-Feesl, Madhu Kollareddy, Karim Malik, Helen Stewart and 12 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Anthony K EdmondsChemistry Department, School of Life Sciences, University of Sussex, Brighton BN1 9QJ, U.K.
Dimitrios-Ilias BalourdasInstitute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-1790-2268
Graham P MarshBio-Techne (Tocris), The Watkins Building, Atlantic Road, Avonmouth, Bristol BS11 9QD, U.K.ORCID 0000-0003-0375-5145
Robert FelixBio-Techne (Tocris), The Watkins Building, Atlantic Road, Avonmouth, Bristol BS11 9QD, U.K.ORCID 0000-0001-7343-668X
Bradley BrasherBio-Techne (R&D Systems), 614 McKinley Place NE, Minneapolis 55413, United States.
Jeff CooperBio-Techne (R&D Systems), 614 McKinley Place NE, Minneapolis 55413, United States.
Cari Graber-FeeslBio-Techne (R&D Systems), 614 McKinley Place NE, Minneapolis 55413, United States.
Madhu KollareddyCancer Epigenetics Laboratory, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, U.K.
Karim MalikCancer Epigenetics Laboratory, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, U.K.
Helen StewartBrighton and Sussex Medical School, University of Sussex, Brighton BN1 9PS, U.K.
Timothy J T ChevassutBrighton and Sussex Medical School, University of Sussex, Brighton BN1 9PS, U.K.
Ella LinehamBiochemistry Department, School of Life Sciences, University of Sussex, Brighton BN1 9QQ, U.K.
Simon MorleyBiochemistry Department, School of Life Sciences, University of Sussex, Brighton BN1 9QQ, U.K.
Oleg FedorovCentre for Medicines Discovery, Nuffield Department of Medicine, NDM Research building, Old Road Campus, Oxford OX3 7FZ, U.K.
James BennettCentre for Medicines Discovery, Nuffield Department of Medicine, NDM Research building, Old Road Campus, Oxford OX3 7FZ, U.K.
Mohan B RajasekaranSussex Drug Discovery Centre, School of Life Sciences, University of Sussex, Brighton BN1 9QJ, U.K.ORCID 0000-0003-1311-2880
Samuel OjedaKrantz Family Center for Cancer Research, Massachusetts General Hospital, Charlestown, Massachusetts 02129, United States.
Drew A HarrisonDepartment of Medicine, Harvard Medical School, Boston, Massachusetts 02115, United States.ORCID 0009-0009-5232-0640
Christopher J OttKrantz Family Center for Cancer Research, Massachusetts General Hospital, Charlestown, Massachusetts 02129, United States.ORCID 0000-0001-6142-7241
Andreas C JoergerInstitute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-1232-0138
Hannah J MapleBio-Techne (Tocris), The Watkins Building, Atlantic Road, Avonmouth, Bristol BS11 9QD, U.K.ORCID 0000-0001-5050-0562
John SpencerChemistry Department, School of Life Sciences, University of Sussex, Brighton BN1 9QJ, U.K.ORCID 0000-0001-5231-8836

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Degraders with dual activity against BRD4 and CBP/EP300 were designed. A structure-guided design approach was taken to assess and test potential exit vectors on the dual BRD4 and CBP/EP300 inhibitor, ISOX-DUAL. Candidate degrader panels revealed that VHL-recruiting moieties could mediate dose-responsive ubiquitination of BRD4. A panel of CRBN-recruiting thalidomide-based degraders was unable to induce ubiquitination or degradation of target proteins. High-resolution protein cocrystal structures revealed an unexpected interaction between the thalidomide moiety and Trp81 on the first bromodomain of BRD4. The inability to form a ternary complex provides a potential rationale for the lack of degrader activity with these compounds, some of which have remarkable affinities close to those of (+)-JQ1, as low as 65 nM in a biochemical assay, vs 1.5 μM for their POI ligand, ISOX-DUAL. Such a "degrader collapse" may represent an under-reported mechanism by which some putative degrader molecules are inactive with respect to target protein degradation.

Indexed as

CREB-Binding ProteinDrug DesignE1A-Associated p300 ProteinNuclear ProteinsThalidomideTranscription FactorsBromodomain Containing ProteinsCell Cycle ProteinsCrystallography, X-RayHumansModels, MolecularProteolysisStructure-Activity RelationshipUbiquitinationUbiquitin-Protein LigasesBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsCREB-Binding ProteinE1A-Associated p300 ProteinEP300 protein, humanNuclear ProteinsThalidomideTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID40244695
PMCPMC12067448

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.