Evidence map›Paper›PMID 40241823›Full record

ArticleFrontiers in plant science2025

Physiological mechanism of lodging resistance of oat stalk and analysis of transcriptome differences.

Jiangdi Yu, Ran Zhang, Xiang Ma, Zhifeng Jia, Xiaoxia Li, Yuzhu Li, Huan Liu

Abstract read
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Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jiangdi Yu *Institute of Ecological Protection and Restoration, Chinese Academy of Forestry, Beijing, China.
Ran Zhang *Institute of Ecological Protection and Restoration, Chinese Academy of Forestry, Beijing, China.
Xiang MaAcademy of Animal Sciences and Veterinary, Qinghai University, Xining, China.
Zhifeng JiaAcademy of Animal Sciences and Veterinary, Qinghai University, Xining, China.
Xiaoxia LiInstitute of Ecological Protection and Restoration, Chinese Academy of Forestry, Beijing, China.
Yuzhu LiKey Laboratory of Grassland Ecosystem, College of Pratacultural Science, Gansu Agricultural University, Lanzhou, China.
Huan LiuKey Laboratory of Grassland Ecosystem, College of Pratacultural Science, Gansu Agricultural University, Lanzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Lodging has become an important factor limiting oats production. Methods: To understand the relationship between oat lodging and stem growth, we selected three oat cultivars with different lodging resistance traits and conducted a detailed analysis of their stem physicochemical properties, and transcriptome sequencing on them at different growth stages were performed. Results: Important plant characteristics like: length of the second stem internode, stem wall thickness, breaking force, mechanical strength, soluble sugar, starch, lignin, and silicon content were closely related to oat lodging performance. With the growth of the second stem internode at the base of oats, the number of coexpressed differentially expressed genes (DEGs) increased. And DEGs were specifically enriched in starch and sucrose metabolism, phenylpropanoidbiosynthesis, MAPK signaling pathway-plant and carbon metabolism. There were many TF family types among the different comparison groups, and p450, Myb_DNA-binding, WRKY, and AP2 families accounted for the most. Additionally, there was a specific high expression of genes related to the synthesis of cellulose(CesA9, CesA7, and CesA4) and lignin (CCR1, 4CL8, and 4CL3) in lodgingresistant cultivar and middle lodging-resistant cultivar. WGCNA analysis identified genes closely related to lodging resistance, namely MBF1c, SKP1, and CAND1, which were specifically up-regulated on the 35th day of growth in the second stem internode of the highly resistant 'LENA'. These genes can all serve as positive regulatory factors for oat lodging. Discussion: Ultimately, our work analyzed the transcriptional network regulatory relationships, laying the foundation for elucidating the physiological and genetic mechanisms of oat lodging resistance, and providing excellent genetic resources for oat and other crop breeding.

Indexed as

Avena sativadifferentially expressed geneslodging-resistanttranscriptome sequencingweighted gene co-expression network analysis (WGCNA)

Identifiers

PMID40241823
PMCPMC12000040

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.