Evidence map›Paper›PMID 40241763›Full record

ArticleiScience2025

Scaling down annotation needs: The capacity of self-supervised learning on diatom classification.

Mingkun Tan, Daniel Langenkämper, Michael Kloster, Tim W Nattkemper

Abstract read
In one paragraph

Article in iScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mingkun TanBiodata Mining Group, Faculty of Technology, University of Bielefeld, 33501 Bielefeld, NRW, Germany.
Daniel LangenkämperBiodata Mining Group, Faculty of Technology, University of Bielefeld, 33501 Bielefeld, NRW, Germany.
Michael KlosterPhycology Group, Faculty of Biology, University of Duisburg-Essen, 45141 Essen, NRW, Germany.
Tim W NattkemperBiodata Mining Group, Faculty of Technology, University of Bielefeld, 33501 Bielefeld, NRW, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the field of life sciences, diatoms are essential biomarkers for assessing environmental health. Recent advancements in deep learning have transformed the traditionally laborious process of diatom classification through light microscopy. However, commonly used supervised learning methodologies necessitate annotated data, demanding the expertise of seasoned professionals. This study introduces self-supervised learning to tackle the challenge of scarce annotation in diatom classification. First, our results reveal that self-supervised pre-trained models considerably enhance the utilization effectiveness of available annotated data, with benefits increasing as the dataset size decreases. Second, fine-tuning our models with a very small labeled dataset (e.g., 50 samples per class) yields macro-average accuracy comparable to full-supervised levels, thereby reducing the reliance on taxonomic experts by approximately

Indexed as

Aquatic biologyAquatic scienceBiological classification

Identifiers

PMID40241763
PMCPMC12002600

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.